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Information for unigene UN16005

FASTA Sequence
Unigene ID: UN16005Length: 1029  SNP
ATGTCCGAGAGCCGGTCACAAATTTTCTAGATCAGCAAAAGACAAGGACCACAAGCTTACGATGATTTCTTTTATTAAGACAGAAC
ATCAAATCAACTGACACATATTTCCCATACATTAATTGTTTTAAAAACATTACATTAGCTGATAATATTCTATTTTCCGGGGACGA
AGTTGGTGGCGTAAGCCCAGGCATTGTTAGCCACAGGGTCCGCAAGATGGTCAAACAGATTCTCAATTGGTCCTTTACCAGTGACA
ATGGCCTGGACAAAGAAACCAAACATGGAGAACATAGCAAGCCGACCGTTCTTAAGCTCCTTCACTTTCAATTCTGAAAACGCCTC
TGGATCCTCAGCTAAGTTCAACGGGTCAAACGCCCCTCCTGGGTAAAGCGGGTCAAGGCCTTCACCAAGAGGTCCACCTCCGATTC
TGTACCCTTCGATCAACCCCATCAGCACAACTTGAGAAGCCCAGATAGCTAATATGCTCTGCGCGTGGATCAAGTTAGGGTTTCCG
AGGTAGTCAAGCCCTCCTTCTGAGAAGATCTGAGACCCTGCCTTGAACCACACGGCTTCGCCGAATTTAACACCGTTTTTGGAGAG
GATCTCTGGGAATGTGCAACCTAATGCGCCGAGCATTGCCCATCTGCTGTGGATTACTTCAAGCTCACGGTTCTTTGCGAAGGTTT
CTGGGTCGGCCGAGAGGCCAGCTGTGTCCCAGCCGTAGTCTCCGGGGTATTCTCCGGTTAGGTATGATGGTGTGTTCTCTGAGAAT
GGCCCTAAGTACTTGGGACGGTCTGGTCCGTACCAGATGCTCTGAGGAGTTGACTTGACGGTACGGCGCATGACGACGCGACCACC
ACCGTTGGAAGCTCCGACTTTGCGGAGGAGATCGTTGGAGGACTTCAGGGCCGTTTGGCCGGCAAAAGAGGAGTGTTGGATTGCTG
ATGTGGCCATTTCTTGTATTCTCTGACTCCCAAGCAAACACACAAATGAAGAGATGAATAAGCAAAGAAGAGATGGCTCCCCT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAJ33772 unnamed protein product [Thellungiella halophila]14027e-153
NP_189406 photosystem II light harvesting complex protein 2.3 [Arabidopsis thaliana]13874e-151
XP_002875397 LHCB2:4 [Arabidopsis lyrata subsp. lyrata]13874e-151
XP_002875398 LHCB2:4 [Arabidopsis lyrata subsp. lyrata]13784e-150
AAD28771 Lhcb2 protein [Arabidopsis thaliana]13491e-146

Swiss-Prot top hits (Blast detail)Scoree value
P27494 Chlorophyll a-b binding protein 36, chloroplastic12795e-140
P27518 Chlorophyll a-b binding protein 151, chloroplastic12742e-139
P12062 Chlorophyll a-b binding protein 37, chloroplastic12643e-138
P12328 Chlorophyll a-b binding protein of LHCII type I, chloroplastic12402e-135
P14278 Chlorophyll a-b binding protein 4, chloroplastic12251e-133

TrEMBL top hits (Blast detail)Scoree value
Q9XF87 At3g2770013873e-151
Q9XF86 Lhcb2 protein13497e-147
Q9SYW9 Lhcb2 protein13452e-146
Q9SHR7 At2g05100/F15L11.213443e-146
Q9S7J7 At2g05070/F1O13.2013362e-145

Arabidopsis top hits (Blast detail)Scoree value
AT3G27690.1 LHCB2.3; chlorophyll binding13881e-153
AT2G05100.1 LHCB2.1; chlorophyll binding13451e-148
AT2G05070.1 LHCB2.2; chlorophyll binding13379e-148
AT2G34420.1 LHB1B2; chlorophyll binding10691e-116
AT1G29910.1 CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3); chlorophyll binding10582e-115

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
196  46%
 
64  31%
 
81  8%
 
181  8%
 
71  8%

Unigene MembersMember information