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Information for unigene UN16007
| FASTA Sequence |
| Unigene ID: UN16007 | Length: 1285 |
| SNP | CTGGTGGAACTGATCGATCACCAAAGTTTAAAATAAAAATTGCCTCAAAGGAGAGTGTCACATGGATCAAGGCAGATGAAGTTTAG
AGTTTTCTTGTTGTTCAAAAGAAAAGAAAGTTCTCTTGTTGCTATGATATTATATTGTTACATAATATTATATCTCAAGAAAAATA
AACATCAAAGAAGTTTCAAAAGCTAACCAAAACAAATACCATTCACGGTTTAGTTTCCAGCTGCCAAATCTTCACCATTCCATCAT
CACTGGCCGAGGCAAGCAACCTGTTCTCCTTACTGGGTGACCATTGAACAGAGTTTATATCCATTTCATGTGCTTTTTCCTTCTTG
AGTAAAAGATTATACGAAGGTCCATTAACAGAGTCATGTTCGCTGTCCACAAACAACCCTATGGCATCATCACCAGCTCCACTGGC
AATAATGTCATCGCTTGACCAGTGACTTGAGAATATGGTACGGTCATGATAACCAGAAAGTGTACAAAGATGAGTCCACGGTGCAT
ATCCTTCACCAGAGTGCATCATGGAAATATCTGCGGTCCATATCTTCAAGGTTAGATCATCACTACAGGTGACCATCTTGTCCCCA
GTAGCGTTAAACGAGATGGCCCAGACAGTAGAGGAGTGACCATTGCTAGATTCATTTAAGGTCTGGACACATTGATAATCACCATC
GTCATCTTCAGCCCACCAAACCTTGATGGTGTTATCATAACTGCAAGAAAACAAAACATCCATGGTGGGATGCCACTGAACCATCT
TAACATCTTGTGTATGCCCATTCAAGACTGCAGCACAATCATATTCATTCCCTCCTAGCACTTCCCAAATCCACACAGATTTGTCT
CTGCTACATGTTGCAAGGTATGAACCAGATGCATTCCACGATACGCTCTTGACTTCGTTTTCATGTCCCTCTAATGTGGAAATACA
CTCGAACTCATCCCCAAAGTCTTCCCAAATACCAGTGGTACCATCAAAGCTTGCAGTGGCCAATAACTTCCCGGAAGGTGACCAAG
AACACGACCTCACAGTTCTTGTGTGCGTTTCTTCTAAAACTGCCTTGCAGGACCAGGAGCGAGAGAGAGCGGACTGTTGCCAGATT
CTAACGGTGTTGTCACCACTGCAAGAGGCTAGAAGAGAAGAAGAGACAGGGTTCCAGGCTACGTTCCAAACTCGGTCGGTGTGGCC
TTCCAGTTTCTGTACCTCGACTAACTCCAAGTTTTTCTCCATCAAATCCATCTGAATCGGACTATAGAACCCTAATTGCCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_565615 transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] | 1661 | 9e-183 |
| XP_002878917 EMB1345 [Arabidopsis lyrata subsp. lyrata] | 1655 | 4e-182 |
| NP_001031421 transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] | 1555 | 2e-170 |
| XP_002869231 predicted protein [Arabidopsis lyrata subsp. lyrata] | 1474 | 4e-161 |
| XP_002528743 WD-repeat protein, putative [Ricinus communis] | 1433 | 2e-156 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| A7RWD2 Probable cytosolic iron-sulfur protein assembly protein | 927 | 5e-099 |
| Q292E8 Probable cytosolic iron-sulfur protein assembly protein Ciao1 | 889 | 1e-094 |
| B4GDM7 Probable cytosolic iron-sulfur protein assembly protein Ciao1 | 887 | 2e-094 |
| B3MC74 Probable cytosolic iron-sulfur protein assembly protein Ciao1 | 878 | 2e-093 |
| B4QFZ8 Probable cytosolic iron-sulfur protein assembly protein Ciao1 | 878 | 2e-093 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O80990 Expressed protein | 1661 | 6e-183 |
| Q2V455 Putative uncharacterized protein At2g26060.2 | 1555 | 1e-170 |
| B9SRX4 WD-repeat protein, putative | 1433 | 2e-156 |
| B9GTB0 Predicted protein (Fragment) | 1318 | 4e-143 |
| C6TAK2 Putative uncharacterized protein | 1303 | 2e-141 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G26060.1 emb1345 (embryo defective 1345); nucleotide binding | 1662 | 3e-185 |
| AT2G26060.2 emb1345 (embryo defective 1345); nucleotide binding | 1555 | 7e-173 |
| AT4G32990.1 nucleotide binding | 1081 | 6e-118 |
| AT4G02730.1 transducin family protein / WD-40 repeat family protein | 201 | 7e-016 |
| AT5G25150.1 TAF5 (TBP-ASSOCIATED FACTOR 5); nucleotide binding / transcription regulator | 187 | 3e-014 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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