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Information for unigene UN16020

FASTA Sequence
Unigene ID: UN16020Length: 1707  SNP
CTCAAAATTTATCATTTAATTAATTGACAACAACATTTTTACTCCCATACAAAACTTTGACAACAACAATATATAGTTAATTACAT
TTATTTGACTATATTTTTGACGTATATTTTTGACGTAAGAATATTTACTATGACCCTTAATTTTTGCATCAACAAACAATTTGAAC
AGCTTTCATTCCAGGCAATGGTGTTTAGGCGGCTCCTTGCTGATGGTGATCATTTAGATGAACAACATTTGAATCAAACCACACCC
GTCTTATCATTTCCTGGGTGGCGCGCTGTCGCTCGCCAATTGTTGTCCGACCAGCGGTTCTACCCCTGCCTCTGCTGCAGACCCTG
TCGACGTGGCTGGTTCCGTGTTGGACTGGGACTTAGCATTTTGACTCCTCTTACAGAAAATAGCCGCAAACACTGATGAGACAGCC
ACAAAGGCAGAGGCCAACGAAGCGCCAAGAATGACTGGTAACTTGGCCTTGGGTTTCGCCTTCTGTGTTTGTATTGCAGCTTTCTT
CGCTGCCTCGAATTTCAAACGAGCCTCTTCCATTGCTTTCTCGTTTGGTTTTGGTTTCTTTTTTTGGCGACCTTCGTTACGATCAT
CAGTACTGTCGTCACCGCTTTGTCCACCTCCTCCTCCGTAATCACCACCGACAACCTTACTTATCGAATATAGCTCGATAGCGTTG
ACGATTGGAGGCAAAGTCGAGTCCTTGGTAGATTTAAAGCTCACCTTGGACTCCGAAGTGGCTACGATGTCTCTTGTGACGAACTC
TGTAGCTTTCCCGAGAACCGGTACGATGGGAACTGAATTCAGTTGTTTGTTGTCCAGAAAAACGTTGAACGACCGTGTCATGGTCC
GACCTAGACTTTCGGGCTCTGAGAAGTATAGAGCCAAGTAAATCGGTCTGCCAGCTGAGGGTAAGGTTTTGTAAGAGAGTCTTATG
ATGTCTTGCGACAAAGCCTTTTCCATAACATTAGCGGGAGGTTTATTGGGCACGCCAGTGATGTCAATCGATCGCGCTGAGATTTT
TAACTCGCTGGATCCTGGGTCGTCGGGTTCTAACGGGAACCATAACCTACCGAATGGGTCGCGTTCAACGTTTTTGTAACCATACG
GAACTAGATTTCGGCGGATGAGAGCTTCGTCGGGTCCAAGATCGTCGTACATGTCAGCATCCAAACCATAAACTTCAATGGAGGAT
ATAAAAGGAACATCTGACACATGCGTACGGATTAGGCAAACGCTGATACTCTCACTCGCAGGGAGAATATATCACCTTCCGATATA
AAAATCGCCCTTGTTATTGAGCTTCGGTGAAACAGTAAAATTCAACTGTGTCACGGTGTTTCTCGTCGTAAACAACGTCGAAAGAG
GGCGCCAAGGGATTTTTCGTCGTAGTTCCCGTAGAAAAACATTGTTCTAACAAGTGTTTTACGGCCTCTTGTCGCCGGAATGTTGC
TATAGCAATTTTTATTTTTTGAGGGAAAGAACCGGAGGGTGTTGAGCGGCTTCGTCCGTTTAGTCTCGAGTGACTTACCGCTGGTG
GTGAAGTCTTTGTCTCCGATCCATTTTACATTGTAGGAGTCCAAGTAGGATTCCGATGCTCCACAGTCGATGTTTATATATTCTGA
GAGGGAAAGGATTGGGGAGGAGAGAGACAGGAGAGTGAGAAGAAGAAGCACTGCCATGATCAACATTCAACCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_190213 protein kinase-like protein [Arabidopsis thaliana]6691e-067
CAB90955 putative protein [Arabidopsis thaliana]6672e-067
XP_002877474 predicted protein [Arabidopsis lyrata subsp. lyrata]6369e-064
NP_190212 receptor protein kinase-like protein [Arabidopsis thaliana]6036e-060
CAB90954 putative protein [Arabidopsis thaliana]6036e-060

Swiss-Prot top hits (Blast detail)Scoree value
A5PHT0 Uncharacterized protein At1g244854161e-039
C0LGW2 Probable LRR receptor-like serine/threonine-protein kinase PAM741517e-009
Q9FN93 Probable LRR receptor-like serine/threonine-protein kinase At5g596801311e-006
O64483 Senescence-induced receptor-like serine/threonine-protein kinase1274e-006

TrEMBL top hits (Blast detail)Scoree value
Q8GYH9 Putative uncharacterized protein At3g46280/F12M12_2506691e-067
Q9LX67 Putative uncharacterized protein F12M12_2506672e-067
Q67ZF1 Putative uncharacterized protein At3g462706034e-060
Q9LX68 Putative uncharacterized protein F12M12_2406034e-060
Q9LX69 Putative uncharacterized protein F12M12_230 (Fragment)5945e-059

Arabidopsis top hits (Blast detail)Scoree value
AT3G46280.1 protein kinase-related6695e-070
AT3G46270.1 receptor protein kinase-related6032e-062
AT3G46260.1 protein kinase-related5943e-061
AT1G24485.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT3G46280.1); Has 842 Blast hits to 816 proteins in 138 species: Archae - 2; Bacteria - 146; Metazoa - 81; Fungi - 37; Plants - 455; Viruses - 2; Other Eukaryotes - 119 (source: NCBI BLink).4161e-040
AT1G24485.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: protein kinase-related (TAIR:AT3G46280.1); Has 918 Blast hits to 887 proteins in 141 species: Archae - 0; Bacteria - 157; Metazoa - 120; Fungi - 46; Plants - 448; Viruses - 15; Other Eukaryotes - 132 (source: NCBI BLink).4161e-040

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
64  40%
 
84  40%
 
112  20%

Unigene MembersMember information