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Information for unigene UN16043
| FASTA Sequence |
| Unigene ID: UN16043 | Length: 1652 |
| SNP | ACGATTACGTAAGAGAATACTGAAACTTCTCTGACGAGACACAAGAACACGTGAACTAGGCACAAACTAAACAAACTCCAACTTAA
AAGGATCAAATCAATTATTTTGGGTATTATCTTGGACCCTTTTGAAACACGATAAAAGTCAACCCACAAATAGTGCTTACTTTATA
AAATTGAACCTTGTGACAAGAAGACGTAAGTGGTGGAACATTATTTATAGTTAAATCCAGGATAAAAAAGTGAATTATTTATATGG
ACTCTGAAAGCCACAACCTCCGAGGTTTGAACTTTGTAGATACACCAAAAGATTACTTGTGCCAGACGGCATAGCGATGGCCACTT
GTTGCTAGAGTCCACTCTCTACCAGAAGGACACCAAGAGGCATCTCCAAGCTTCATGCACAGTTTCTCACCAACAATGGCTGCGTA
TAGATTAGACTTTGCTTCCAAAACACGGATCTTTGACCTACTATGAATATCTTGTCGCCTCCTAACGTCAATCAGTTTGACAATCT
GGTCATGAATCGAGCTTCCCCAATCGTAGAAGTGATCATAGAACACACATGGGATGCCAGGATGAGTAAGTATATATGCATAGCCC
TCCATGATATGGTGCGAAGGGAAAGGCCAGTGAGCCTGAGTAGAACCAGTGTCATGGTTATCAAGGAACGTGACAGCTCTTGAAGG
CCACCATCCCATTACTCCCGGTGGCTTACCTTGTGCATCACATAAACGCCAATACTGACCCTTTACAGCTTCCTGTAGAATCCCTT
TAGTAGTGAAGTCAAATGCAGCTGAAAGCTGTCCCGTGGCATCTATCCAATTGATTATACGCTGCCTATGACTATCTTGGTTATAG
TCGAGGCCATGACCATTGTAGTGCAAGAGTCCCAACATTCTCCAACTGAGAATAAGGGTTTGGCTGCTCCTATGTATTCCTTCACA
TACTGTGCTGAATATGCTCTAGCAAAGTCAAAACGGAAGTCTTGAAATCCAACGGTGTTGCGCAACCAACGAAGCCAACCGGTTAT
ATCTTTCCTAACAAAGTGTTGAGTGTGATCAACATTTGGAACTCCATTGAAGTTTTCTCCTGTGCTTCGGTTCCCCAGTCCTCCTG
TACATGAAGTAACAGCGTGTTCATTCCAAGGCAGTGAGATCCCATCGTAGCGGTTATACATTCCACCGTGTCCTCTGGTAGTACCA
ACGCGATGGTTGATGACAATATCAGCCATAGCTCTAACTTTGTGCTGTTTCATCTTACGAAGCAGGGATTTCAACAGGTGCTCGGA
GCCGTATGCTGAGTTTAGTGAATAAAGGTCTTGTGGAAGGTAACCTTCTGGTGCAAGGGACTGAGATGGTGGTGGTAGCCATGCAG
AAGTGAAGCCTGATTTTGCGATGTCTTGAACTTTTGCGTCCAAGTTTCTGTACCAGTCATGTTTATGGGACTCCCAGTTATAAGCC
TGGAGAATGACTTCCCTTCCATCACGCATAACCGCACCGATATCAGTTTGGTCATTGCATCCATCAAAAACATTGTTATAGTAGCC
CATGTTGAAACACTGATTGGCGCAACAATGAGATCAAGTTTAAAGAAGATCAAATATACCAAGGTGAAGAGAAGAAGCTACACAGC
TGCGTCTTCTTGGGATCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002887626 hypothetical protein ARALYDRAFT_316534 [Arabidopsis lyrata subsp. lyrata] | 1166 | 3e-125 |
| NP_177740 alpha-amylase-like 2 [Arabidopsis thaliana] | 1164 | 5e-125 |
| AAF17626 T23E18.6 [Arabidopsis thaliana] | 1087 | 5e-116 |
| XP_002510621 alpha-amylase, putative [Ricinus communis] | 980 | 1e-103 |
| AAX33234 cytosolic alpha-amylase [Malus x domestica] | 975 | 4e-103 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P04063 Alpha-amylase type B isozyme | 557 | 5e-056 |
| A2YGY2 Alpha-amylase isozyme 2A | 552 | 2e-055 |
| Q0D9J1 Alpha-amylase isozyme 2A | 552 | 2e-055 |
| P00693 Alpha-amylase type A isozyme | 550 | 4e-055 |
| P04750 Alpha-amylase type B isozyme | 549 | 5e-055 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8LFG1 Alpha-amylase like protein | 1164 | 4e-125 |
| Q9SGS0 T23E18.6 | 1087 | 3e-116 |
| B9R8H8 Alpha-amylase, putative | 980 | 8e-104 |
| Q5BLY0 Cytosolic alpha-amylase | 975 | 3e-103 |
| Q2VMU3 Alpha-amylase 2 | 960 | 2e-101 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G76130.1 AMY2 (ALPHA-AMYLASE-LIKE 2); alpha-amylase/ calcium ion binding / catalytic/ cation binding | 1164 | 2e-127 |
| AT1G69830.1 AMY3 (ALPHA-AMYLASE-LIKE 3); alpha-amylase | 566 | 4e-058 |
| AT4G25000.1 AMY1 (ALPHA-AMYLASE-LIKE); alpha-amylase | 468 | 1e-046 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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