 |
Information for unigene UN16044
| FASTA Sequence |
| Unigene ID: UN16044 | Length: 897 |
SSR | SNP | GGATTTCAAATCTCAGTTTACACCTTCACACACTCCTCTCTCTCTCTCTCTCTTCAGATCAATAGCTGGTGAGGAGGAGGAGAAGC
AAGCAGCGGCGGAGATAAATGGCAGGGTACAGAGTGGAAGACGACTACGATTACCTCTTCAAAGTCGTCCTGATAGGCGATTCGGG
TGTAGGGAAATCGAATCTGCTCTCCAGATTCACCAAAAACGAGTTCAATCTCGAGTCTAAATCCACCATTGGTGTCGAGTTCGCAA
CTCGTACCTTGAAAGTCGATGAAAAGGTCGTCAAGGCTCAGATTTGGGATACTGCTGGTCAAGAAAGGTACCGTGCCATCACTAGT
GCATACTACCGTGGAGCCGTTGGGGCGCTCCTAGTATACGATACTACCCGCCGTGCAACTTTCGAGAACGTTGACCGGTGGTTGAA
GGAGCTCAAGAACCACACAGACCCTAACATCGTGGTGATGCTCGTCGGTAACAAATCCGACCTGCGCCATTTGCTAGCTGTCCCCA
CGGAAGATGGGAAATCGTATGCCGAGCAGGAATCGCTTTGCTTCATGGAAACATCTGCCCTTGAATCCACCAACGTCGAGAACGCC
TTTGCAGAGGTTTTGACGCAGATTTACCGTATAACAAGCAAGAAGCAAATGGAAGCTGGTGAAGATGGGAATGGATCTGTTCCTAA
AGGTGAGAAGATCGAGGTTAAAAACGATGTCTCTGCTCTGAAGAAACTCGGGTGCTGCTCAAATTGAAAGTCTTTTTTATTTTTGT
AATCTGTTGAGTGAGAATTATAAGGTCCATTGTTTTGGTTCTCTTCTTGGTTTGTAATAATATTGACATCTATATGAGTTCTAGAC
TATACACTTTATAATGTTTATTTTGAGTATTGTTACT
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_173136 Ras-related protein RABA1b [Arabidopsis thaliana] | 1073 | 8e-115 |
| XP_002892930 hypothetical protein ARALYDRAFT_471894 [Arabidopsis lyrata subsp. lyrata] | 1072 | 1e-114 |
| AAM63927 guanine nucleotide regulatory protein, putative [Arabidopsis thaliana] | 1069 | 2e-114 |
| ACU23949 unknown [Glycine max] | 964 | 3e-102 |
| BAA02113 GTP-binding protein [Pisum sativum] | 962 | 6e-102 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q39222 Ras-related protein RABA1b | 1073 | 3e-116 |
| P40393 Ras-related protein RIC2 | 921 | 1e-098 |
| Q40194 Ras-related protein Rab11D | 908 | 5e-097 |
| Q9FK68 Ras-related protein RABA1c | 902 | 2e-096 |
| Q01111 Ras-related protein YPT3 | 870 | 1e-092 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q0WSQ7 Putative uncharacterized protein At1g16920 | 1073 | 5e-115 |
| Q8LC05 Guanine nucleotide regulatory protein, putative | 1069 | 2e-114 |
| C6TM07 Putative uncharacterized protein | 964 | 2e-102 |
| Q08150 GTP-binding protein | 962 | 4e-102 |
| Q7DLK8 Guanine nucleotide regulatory protein | 962 | 4e-102 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G16920.1 ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B); GTP binding | 1074 | 2e-117 |
| AT4G18800.1 ATRABA1D (ARABIDOPSIS RAB GTPASE HOMOLOG A1D); GTP binding | 909 | 3e-098 |
| AT5G45750.1 AtRABA1c (Arabidopsis Rab GTPase homolog A1c); GTP binding | 903 | 2e-097 |
| AT1G06400.1 ARA-2; GTP binding | 855 | 6e-092 |
| AT5G60860.1 AtRABA1f (Arabidopsis Rab GTPase homolog A1f); GTP binding | 852 | 1e-091 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
