Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN16059

FASTA Sequence
Unigene ID: UN16059Length: 1186 SSR 
GCAAATCTTAGTGTAGCTTATAGTTGTCCAAAAAAGAAGAAAAAAACCATCAAAAGAGAAGAAAATGGAGTAAGGATTCACGCATT
GATAGCAACATTTTAATTCCAAGCAAATAAGGAAAGAACGAAGACAAAAGATCCAAGTTAGAAAAGTGAATCAACGAACAAAACTA
ACAAGAAGAGAGAGAGAGAAGTGTAGTCGATCTTGGCCGCCTGCTAGTTAGTAGAGCTTTATTCTTGTCTGGATCGGTGCACGGCA
AATCGGACACATTTCAAGATCCGGTCCACACTCGCAACAAGTCTGATGGCCACAACCAAAGGCCATGTCTTTAGGGTTGCTCAGAC
ATATCGGACATAGCTGGTTATCGAAAGCAGAGGTGGTAGCGGGCGTTGCAGGACTAGATCTTTCGGTGGGATGAGGAGGTACGCTC
GGTTTGAAACTTGGAACACGGTTAGCTTTTGGTTTGTTGTTGTATGATGACGATCCACCATGCATTGGAGGTGGAAGAGGGAATCG
TTCCTGGATATTCCCATTTCTTCTTCCTAAAAGGTTAAGCTCTAATGTGGCCTTGTATTGTTGAGGAATTTCCATGAGAGCAGAGA
GGGCAAACTCTGTTTCCTTTAAGGACTGAGCTTTGTTCTTTGACATGATCTCTGTGAAGTTGACAAATTGGAAGTTATCAAAAGCT
CTGGATGGAATATTATCGTCAAACTCTCTCATCATATCCCATGGTCCATCCCCAACCCCCACTAAGACTATTGATAGAGGCAGCTT
ACTCGCTTGCACAATAGCCTCCACAGTCTTCTGTTCTTGCGGACTTAACTGTCCATTTTCAGTGTCAACGCTTCTTGTAACCTGCC
CATCTGCTATTATCACTAAGACGTGATACTGTCCACCACTCTGCTCAACAATGGTCATTGCCATATCGATGATGGGAGCAAACGAC
GTCGGCCCCGCGAGCTTAAGCTGAGGCACGATCTCTTTATACCGACCAAGCACTTCCTCAAACCCATTACAGAACCTATCTTCCGG
GTTGAAACTAAACACATCTTGATCATGTGTTGACGCGTCTCCAAAACCGTAACATGGAATCAAGTTGTCCTCGTCAAAGGCGGCTA
ATGTTCTTCCTATTATAGTTATGGCTTGTTCGTAAGGGTTGGGGTTATTGCCTATGAAATGTAAGCTC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_196946 E3 ubiquitin-protein ligase RGLG2 [Arabidopsis thaliana]15766e-173
BAH19894 AT5G14420 [Arabidopsis thaliana]15766e-173
XP_002873665 hypothetical protein ARALYDRAFT_488284 [Arabidopsis lyrata subsp. lyrata]15668e-172
XP_002271885 PREDICTED: hypothetical protein [Vitis vinifera]13581e-147
XP_002298557 predicted protein [Populus trichocarpa]13122e-142

Swiss-Prot top hits (Blast detail)Scoree value
Q9LY87 E3 ubiquitin-protein ligase RGLG215762e-174
Q9SS90 E3 ubiquitin-protein ligase RGLG113828e-152
Q09221 Copine domain-containing protein 22761e-023
Q8C166 Copine-12681e-022
Q9HCH3 Copine-52653e-022

TrEMBL top hits (Blast detail)Scoree value
B9DGM7 AT5G14420 protein15764e-173
B9GIK6 Predicted protein (Fragment)13122e-142
B9SLV5 Copine, putative12933e-140
B9HTQ4 Predicted protein12825e-139
C6TIU9 Putative uncharacterized protein12476e-135

Arabidopsis top hits (Blast detail)Scoree value
AT5G14420.1 RGLG2 (RING domain Ligase2); ubiquitin-protein ligase15772e-175
AT5G14420.3 RGLG2 (RING domain Ligase2); ubiquitin-protein ligase15772e-175
AT5G14420.4 RGLG2 (RING domain Ligase2); ubiquitin-protein ligase15772e-175
AT5G14420.2 RGLG2 (RING domain Ligase2); ubiquitin-protein ligase15772e-175
AT3G01650.1 RGLG1 (RING domain Ligase1); protein binding / zinc ion binding13835e-153

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
92  67%
 
111  33%

Unigene MembersMember information