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Information for unigene UN16075
| FASTA Sequence |
| Unigene ID: UN16075 | Length: 805 |
SSR | SNP | AGACAAAATCATCTGTATTATATACTAAAAAGTAAACAAACTACTTCGATTTCATTTTTTGATTTGGTAATGTTTATTGCTCATAT
CATTCATATGTATATCTACAAACACATGAAAGCGTGGCAAATCTAATGTTAGCAAGGGTGAAAAAGAGCAAATTTAAAAGTACAGG
GGTGAAAAGTCAAAAAGAAAAAAGACACAAGGAGGAGGGAAAAGAAGCCGTCTCTCTCTATAGTTCCGGCACGGGACAGTACTCGC
TGTGGAAGTCATGAACACCCGAAGCAGCCCACAGCCGTTGATTAAACTCTTCTTGCATCTCATCCGGAACAAACGGCGTTCTACAG
AGAGGACACGTCTTCTGATCGTGATCCATCCAACGGTCGAGACAGCTCCGGTGGAATATGTGCCTGCAGTTTCTCAGCCACCGGAT
CTCTTGCTCTCCTTCGAACTCGTAGAGACAGACGGCGCAGCTTTCCGGCAGATCCTCGCCGGAGACGTCTTCGAACTTGATGACGG
GTAAGATCTCGCGGATTAGGAGGGCGGAGAAGGGGGAGCGGAGTTCGGTGGGTGTTCGGGTCGGGTGAGATGTGTGGTCGGGCCAG
GTTTGGTCCATTTCGAGGAAGTCGGAGAGGCCCAAGAAGCGGAAGAGAGAGAAGAGGACGGTTCTGATGAAACTGAGTAGGGAGAG
TGTTTGTACGAAGAGCTTGGGGATGAAGACCTCTGTGTAGCCTACGGGAAAGCCCATCGGAGCTAGAGGGAGAATAGAGAGAGAGA
GGGTGAGTGAGCTCTGGTTAATAAAGGTTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_191705 brassinosteroid-responsive RING-H2 [Arabidopsis thaliana] | 821 | 1e-085 |
| XP_002278353 PREDICTED: hypothetical protein [Vitis vinifera] | 634 | 5e-064 |
| XP_002511894 zinc finger protein, putative [Ricinus communis] | 615 | 8e-062 |
| XP_002302597 predicted protein [Populus trichocarpa] | 607 | 7e-061 |
| XP_002320813 predicted protein [Populus trichocarpa] | 601 | 3e-060 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SUS5 E3 ubiquitin-protein ligase RHA1B | 214 | 1e-016 |
| Q9SUS4 RING-H2 zinc finger protein RHA1a | 198 | 8e-015 |
| Q940Q4 RING-H2 finger protein ATL4K | 161 | 2e-010 |
| Q8GW38 RING-H2 finger protein ATL1D | 160 | 2e-010 |
| Q5EAE9 RING-H2 finger protein ATL5C | 158 | 4e-010 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9XF92 BRH1 RING finger protein | 821 | 7e-086 |
| B9RDV5 Zinc finger protein, putative | 615 | 6e-062 |
| B9GQB6 Predicted protein | 607 | 5e-061 |
| B9I8M9 Predicted protein | 601 | 2e-060 |
| B9RCF4 Zinc finger protein, putative | 563 | 6e-056 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G61460.1 BRH1 (BRASSINOSTEROID-RESPONSIVE RING-H2); protein binding / zinc ion binding | 825 | 2e-088 |
| AT1G63840.1 zinc finger (C3HC4-type RING finger) family protein | 442 | 4e-044 |
| AT5G41400.1 zinc finger (C3HC4-type RING finger) family protein | 294 | 6e-027 |
| AT4G00305.1 zinc finger (C3HC4-type RING finger) family protein | 240 | 1e-020 |
| AT4G11370.1 RHA1A; protein binding / zinc ion binding | 198 | 8e-016 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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