RadishBase

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Information for unigene UN16094

FASTA Sequence

Unigene ID: UN16094	Length: 1765	SSR
GGGTTCTCTCAAATCCATTCTCTCTCTCTCTCTTTCTATTTCACTCTTCTATCTCGTCCCTTCGCTGCTTCTAACGCCATGGCTGA CGATAAGGAGGTCCCTGGTGCTGTAGTTAACGGACAAGATCAAGTCACTGGCCACATAATCTCCACAACAATCGGAGGCAAAAACG GAGAACCAGAGCAAACAATAAGCTACATGGCGGAGCGTGTCGTCGGAACAGGCTCATTCGGGATAGTTTTCCAGGCAAAGTGTTTG GAGACCGGAGAAACCGTGGCGATCAAGAAGGTTCTGCAAGACAGGAGGTACAAGAACCGAGAGCTTCAGCTGATGCGCGTCATGGA CCATCCCAACGTCGTTTGCTTGAAGCACTGCTTCTTCTCTACCACGAGCAAAGACGAGCTGTTTTTGAACTTGGTTATGGAGTATG TCCCCGAGAGCCTGTACCGTGTTCTTAAACATTACAGCGGTGCGAACCAGAGAATGCCTCTTGTCTACGTTAAACTCTACATGTAC CAGATCTTCAGGGGACTTGCTTACATTCACAATGTTGCTGGAGTTTGTCACAGAGATCTTAAGCCTCAGAATCTTCTGGTTGATCC TCTTACTCATCAAGTCAAGATCTGTGACTTTGGCAGTGCCAAACAGCTTGTTAAAGGAGAAGCCAACATTTCTTACATATGTTCAA GATTCTACCGTGCACCAGAGCTCATATTTGGTGCCACTGAGTACACAACCTCCATTGATATCTGGTCTGCTGGTTGTGTTCTCGCC GAGCTTCTTCTTGGTCAGCCATTATTCCCTGGAGAAAATGCTGTGGATCAGCTAGTTGAAATCATCAAAGTTCTTGGCACACCAAC TCGTGAGGAGATCCGTTGTATGAATCCACATTACACAGACTTTAGGTTCCCTCAGATAAAGGCACATCCTTGGCACAAGATTTTCC ACAAAAGGATGCCTCCAGAAGCCATTGATTTTGCATCGAGGCTGCTTCAGTACTCTCCAAGTCTTAGATGCACAGCGCTGGAAGCT TGTGCGCATCCGTTCTTTGATGAACTGAGAGAGCCTAATGCTCGTTTACCAAACGGACGGCCTTTCCCGCCAATCTTCAACTTCAA ACAAGAGGTAGCTGGAGCTTCACCTGAGCTGGTCAACAAGCTGATCCCAGACCATATCAAGAGACAGTTGGGTCTAAGTTTCTTGA ATCAGCCTGGAACTTAAAACGAACGAGCACAAGATCGAGAACTTTATTATGTATAATGTACCATTACTCAAGAGCCAGAAGAAGGT AGTTTGAAGGCAACTTGGAGGATTAACAATCAGAAGTTTCGCCTCCTTAAACTCTGTTCCAGGAATGTTACTATTCAGAGGCAAGT TTGATGATAGCTTCTACAACCTGACGACTTTCCCAAATCTGCAAAGAAATGTATTTTCTTTTTTCCTTTTTTTAAGTTTGGTGAAA AAAAACAAAATCTCCCCCTTGCACTTCATTCTTTCCGCATCTGTAAATGAGTTTTTTTTAGTCAAGAGTTTCTATTTATATAGTAA AGGTTAGGGTTTCTTTATATATAAAAGAATCTTTAGTCAAAGAGGATCCAATGTCTACCAGAAGAGGAAGGCTGGAGAGGCTTCTG CAGTTTTATTGGGTAGCTTTGTTTTTTGTTTCTTTCTCCTTTTGAATGTTTCTCTTCTTTTAATGAAATACTAGTTTGTTTATGAA CCTACCTTCTTTACAAAGGGCAAATCTCAAGACTTTTTTTTATCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002870026 hypothetical protein ARALYDRAFT_914806 [Arabidopsis lyrata subsp. lyrata]	1978	2e-219
NP_193606 Shaggy-related protein kinase eta [Arabidopsis thaliana]	1975	5e-219
BAJ33611 unnamed protein product [Thellungiella halophila]	1969	3e-218
AAL77705 AT4g18710/F28A21_120 [Arabidopsis thaliana]	1968	3e-218
BAH57105 AT4G18710 [Arabidopsis thaliana]	1944	2e-215

Swiss-Prot top hits (Blast detail)	Score	e value
Q39011 Shaggy-related protein kinase eta	1975	2e-220
Q39010 Shaggy-related protein kinase zeta	1777	2e-197
Q39012 Shaggy-related protein kinase iota	1762	1e-195
Q8VZD5 Shaggy-related protein kinase epsilon	1613	2e-178
P43289 Shaggy-related protein kinase gamma	1597	1e-176

TrEMBL top hits (Blast detail)	Score	e value
C0Z326 AT4G18710 protein	1944	1e-215
B9S8B2 Glycogen synthase kinase-3 beta, putative	1841	1e-203
B7FJ21 Putative uncharacterized protein	1828	4e-202
B9H2G5 Predicted protein	1823	2e-201
A9PGS5 Putative uncharacterized protein	1820	3e-201

Arabidopsis top hits (Blast detail)	Score	e value
AT4G18710.1 BIN2 (BRASSINOSTEROID-INSENSITIVE 2); glycogen synthase kinase 3/ kinase/ protein kinase	1976	1e-221
AT2G30980.1 ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase	1777	2e-198
AT1G06390.1 GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1); glycogen synthase kinase 3/ kinase	1762	1e-196
AT1G06390.2 GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1); glycogen synthase kinase 3/ kinase	1762	1e-196
AT5G14640.1 SK13 (SHAGGY-LIKE KINASE 13); ATP binding / protein kinase/ protein serine/threonine kinase	1613	2e-179

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	3			43%


21	2			29%


9	2			29%

Unigene Members	Member information