RadishBase

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Information for unigene UN16113

FASTA Sequence

Unigene ID: UN16113	Length: 885		SNP
AACAACTAATGATTCATAGTTGCAATCAAATATCACCAACAAGAAAACACGTATGGATTGACGAAGACGCTGTTTTTGATAATTTG CACACAAAGGATAAACTTGAGATGATTAATCGAACAACATCAACATCATCACCATCCACATACCATTTTTTATCATAAATTCAGAA GAAAATAAAAAGCTTGAGAACGAACGACAATGGACTGCCCCCAGATACATACGTTAGTAATAGGAAGGGGCAAAGATTTTTTCAGC AAACAAGAACCAAGATTCCAGAAGCTACTAGAAGCAAGTGCCTTCTGGAGGTTGAACAAGCTTACGGTTATGCGACGCAGCCATTT CTTTCTTCAGTTGTATCAGTATATTCTCCATCGTGTACTCCCTTTGCCAGTTCGCAAGAAGTCCGAACTTCTTTGGATCCACCACT CCTGTTTCATGGTTGACACAAGTCATGTTGACACGTGAATGGAACCGGACAGTTGGGGGTTTCTCCGGGTAATCTTTGTCGCAAAA GAGCTTCAACTGATAGATCCTACCTTCATGAACAGTGTTGTGAGGACCGATGATAGTGCCAGTCCAAGAGCGCATGTAGATGTCAT CACCATCGTCCATTCCATAGCTAACAGTTCCATCTCCAATCCCTTTCTCCCCACGTTCAAGCTCCTCCAGCAACCTGAAGTTTCTC GGTACGACGACACTCGATCCACCAGAGCCAAGAGTCATGTTCGATCGGGTTTGTGGATTTGATTTCGATTTTGAGTTTTGAGATCT GAGCTCTGATCGTGCCGACAGAGACGAGAGACGGAGCTAAAGGGAAGATTTGAGAGAGAATAGTTTTGATGAAAAGACAGAAAGCT CCAATGAGAGGGGCAAATTGGGTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_566968 ubiquitin-conjugating enzyme E2 variant 1D [Arabidopsis thaliana]	773	5e-080
XP_002323400 predicted protein [Populus trichocarpa]	759	2e-078
ADU56174 ubiquitin-conjugating family protein [Jatropha curcas]	756	4e-078
XP_002881424 hypothetical protein ARALYDRAFT_482581 [Arabidopsis lyrata subsp. lyrata]	753	1e-077
ABA40444 ubiquitin-conjugating enzyme family protein-like protein [Solanum tuberosum]	752	1e-077

Swiss-Prot top hits (Blast detail)	Score	e value
Q9SVD7 Ubiquitin-conjugating enzyme E2 variant 1D	773	2e-081
Q9SJ44 Ubiquitin-conjugating enzyme E2 variant 1C	729	3e-076
Q93YP0 Ubiquitin-conjugating enzyme E2 variant 1A	591	3e-060
Q9CAB6 Ubiquitin-conjugating enzyme E2 variant 1B	588	6e-060
Q54D06 Probable ubiquitin-conjugating enzyme E2 variant	463	2e-045

TrEMBL top hits (Blast detail)	Score	e value
A9PBP9 Predicted protein	759	1e-078
C8CP48 Ubiquitin-conjugating enzyme variant	752	9e-078
Q3HVN0 Ubiquitin-conjugating enzyme family protein-like protein	752	9e-078
B3TLV8 Ubiquitin-conjugating enzyme family protein	749	2e-077
B7FNB3 Putative uncharacterized protein	746	4e-077

Arabidopsis top hits (Blast detail)	Score	e value
AT3G52560.1 UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4); protein binding / ubiquitin-protein ligase	774	1e-082
AT3G52560.2 UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4); protein binding / ubiquitin-protein ligase	762	4e-081
AT2G36060.1 ubiquitin-conjugating enzyme family protein	730	2e-077
AT2G36060.2 ubiquitin-conjugating enzyme family protein	723	1e-076
AT2G36060.3 ubiquitin-conjugating enzyme family protein	714	1e-075

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


11	15			29%


6	8			16%


12	4			8%


20	2			4%


8	6			12%


10	8			16%


7	2			4%


9	4			8%


21	2			4%

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