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Information for unigene UN16124

FASTA Sequence
Unigene ID: UN16124Length: 797 SSR 
GGGCAATCGATCTCAACCAACGCCAATCCAATCAAAAATTGTTGTATATGCAAAAACCTAAACTTAGAATCATCATAGATTCTTCC
TGGAGTCAATCCGTTTTCTACTTTTTTGATATTTCACGAAGAACTGCATCGCCAGGTATCTTTTCTATCCAAACTTAAATAAAGTA
TGTCCAATTACCAAGCGGAGGATGCTGATGCTGCTGCTGCGTACATGGACCATGTTGTTGATGATGATGATGACATGGAAGATGTA
GACGATGATTTAGATGATGACTTTCATGGTGATGACATGGCTGCTTCCGACTCCGATGTCGACGAGTTTGACTACTCTAGTAATAA
AATAGCGGATACTTCAGCTGAGCAAGCCCGGAAAGGGAAAGACATACAGGGTATTCCTTGGGACAGGCTTAGCATTACCAGAGAGA
AATACAGACAAACTAGACTTGACCAGTACAAAAACTATGAGAATGTCCCCAACTCTGGTGATTCCTCCGGCAAAGACTGCATGGTC
ACGCAGAAAGGGGCAATCTTTTATGATTTCTGGCGGAATTCAAGATCTATCAAATCAAGCATCCTTCATTTTCAGTTGAGGAATTT
GGTATGGGCAACTTCGAAGCACGATGTGTACCTTATGTCACAGTTTTTGGTGAGCCACTACTCTACTTTGACATGTGGAAAGCATG
AAGTTCTCAATGTTCAAGTCATGTTTCCCATCCGAGAACATCCTGGGAGTTTGTTGAGAGATACCATTGTGGGAGACACCCAGAGG
GCTTCTGTAGACCCAACACGGGA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002894518 WD-40 repeat family protein [Arabidopsis lyrata subsp. lyrata]7798e-081
NP_564699 transducin/WD-40 repeat-containing protein [Arabidopsis thaliana]7743e-080
XP_002882817 WD-40 repeat family protein [Arabidopsis lyrata subsp. lyrata]7555e-078
NP_566453 transducin/WD40 domain-containing protein [Arabidopsis thaliana]7457e-077
XP_002330572 predicted protein [Populus trichocarpa]6301e-063

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9C5N4 Putative uncharacterized protein At1g556807742e-080
Q94AB4 AT3g13340/MDC11_137455e-077
B9N5K3 Predicted protein6301e-063
B9GHK2 Predicted protein6272e-063
B9HBS7 Predicted protein5951e-059

Arabidopsis top hits (Blast detail)Scoree value
AT1G55680.1 WD-40 repeat family protein7741e-082
AT3G13340.1 WD-40 repeat family protein7453e-079
AT5G56190.1 WD-40 repeat family protein5742e-059
AT5G56190.2 WD-40 repeat family protein5733e-059
AT1G78070.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein (TAIR:AT1G36070.1); Has 110 Blast hits to 110 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 28; Plants - 80; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).3781e-036

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
101  20%
 
62  40%
 
112  40%

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