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Information for unigene UN16127
| FASTA Sequence |
| Unigene ID: UN16127 | Length: 1008 |
SSR | | GGACTGTTATTGTCTGAAGAAGAACACAATCTTATCCGACAAAAGAGAGAGAGAGAGAGAGAGTGAAACAAGAATGGCGATTCTCT
GTTCGTCTTCGACAGTTATACAACTCCCTTCTTCTTCGGTGAAAACCTCCGGATGTGACAGAAGGTCTCCGTTTCTAGGATTCTCT
CTAAATGCTATCTCAAAGCCGCAGGTTCGAATCGCCACCAATGCGAACACAAAAAGAGGAGTGCAGGTGAAATGCGAAGCCGAGCA
GGCAACTACTATTACTACTACTACATCATCCCTTGTTCCGGCGAATCAACGGTGGATGTTCGACGAAGAAGAAGCAAATGGCCCTG
ATATCTGGAACACAACATGGTATCCAAAGGCTTCAGACCATGTGAACACGGACAAGCCCTGGTACGTGGTCGACGCAACCGACAAG
ATTCTCGGAAGGTTAGCATCAACCATTGCTAACCACATCCGTGGCAAGAACCTTGCCTCCTACACTCCCAGTGTCGACATGGGAGC
CTTTGTTATTGTGGTGAATGCTGAGAAAGTAGCTGTGTCTGGAAAGAAAAGGAACCAGAAGCTGTACAGGAGGCATTCAGGACGAC
CTGGTGGTATGACTGTAGAAACCTTTGATCAGTTGCAGCAGAGAATCCCGGAGAGGATCATTGAGCACGCTGTTCGTGGAATGCTT
CCCAAGGGACGGCTTGGGAGAGCTCTGTTCAATCACCTGAAGGTGTACAAAGGTCCAGAACATCCTCACGAGGCACAGAAGCCGCT
TGATCTGCCTATCAGGGACAAGAGAATACAGCTGTAGAAATAGATACATACACCATGGAGTATCTCTGTTAAGGTCTAGTTTTATA
TTGGGTTTCTGTAGTTTCTTTTTTCTCAAAGCTAGAGGAGACTTTGCAGATTCTTTATTCTATTGCTTGCAACTATCATCTCTATG
CTATAGAGTTTTTTAATGTGCATTTTCTTGCTGCTAACTATCTTAATGATAATTTGGCTACC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002887748 EMB1473 [Arabidopsis lyrata subsp. lyrata] | 1120 | 3e-120 |
| NP_177984 50S ribosomal protein L13 [Arabidopsis thaliana] | 1111 | 4e-119 |
| XP_002532120 50S ribosomal protein L13, putative [Ricinus communis] | 877 | 5e-092 |
| ABK96526 unknown [Populus trichocarpa x Populus deltoides] | 865 | 1e-090 |
| XP_002316846 predicted protein [Populus trichocarpa] | 832 | 8e-087 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SYL9 50S ribosomal protein L13, chloroplastic | 1111 | 2e-120 |
| P12629 50S ribosomal protein L13, chloroplastic | 799 | 2e-084 |
| Q3MF94 50S ribosomal protein L13 | 499 | 1e-049 |
| Q8DMK8 50S ribosomal protein L13 | 499 | 1e-049 |
| Q8YPK6 50S ribosomal protein L13 | 495 | 4e-049 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9T1K1 50S ribosomal protein L13, putative | 877 | 3e-092 |
| A9PJH3 Putative uncharacterized protein | 865 | 8e-091 |
| B9I1Q8 Predicted protein (Fragment) | 832 | 6e-087 |
| A2WV25 Putative uncharacterized protein | 797 | 7e-083 |
| Q94J17 Os01g0749200 protein | 797 | 7e-083 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G78630.1 emb1473 (embryo defective 1473); structural constituent of ribosome | 1130 | 9e-124 |
| AT3G01790.1 ribosomal protein L13 family protein | 199 | 8e-016 |
| AT3G01790.2 ribosomal protein L13 family protein | 199 | 8e-016 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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