 |
Information for unigene UN16140
| FASTA Sequence |
| Unigene ID: UN16140 | Length: 821 |
SSR | | GGGATCCTCCCTCTTTCCCATGGCCAAGCCATCCTCCTCTCCTCTCCCCAAATCCCAATAACAAAACTCTCCTCTCTCTCTCTCTA
TCTCTCTCTTTCTTCCAATCTTCTTCAGATTCGAAATGGCTGCTGCAATCGCTTCTCTCTCCTTTCCGGCGCTGGGCCAATCCGCA
AAGATTTCCAATTCAACCACGCCTTCTCTTCCTCTCGCCTCCGTCTCCGCCATCTCCAGGAGGATTTCTCGCCACTCTTTGACTTC
TTCTTCTTCTTCTAGGGCTTCGAAACTAATCATCCACTGCATGTCTAGTGTTACCGATGTGCCACCTGTATCGGAGACAAAGTCAA
ACTTCCTAAAAGCGTACAAGCGACCAATCCCCAGCATCTACAACACCGTCCTCCAGGAGCTCATCGTACAGCAGCATTTGATGAGG
TATAAAAAGACTTACCGTTACGACCCTGTTTTCGCCCTCGGCTTCGTCACTGTCTACGATCAGCTCATGGATGGCTATCCCAGCGA
TCAGGATCGTGATTCCATTTTTCAAGCCTACGTCCAAGCTTTGAATGAGGATCCTAACCAATACCGAGCTGATGCGCAGAAGATGG
AGGAATGGGCGCGAAGTCAGACTTCTGCTTCACTAGTTGACTTCTCGTCTAAGAGGGAGAAGTTGAAGCGATTCTTAAGGACATTT
CAGAAGAGCTGGCAGTAAGAAGTTTCAGTTACAGCAGTTCTTCGCTGTTGGCTTGTTCGCTTGCTGAGCTGCAGTGCTACTGATCC
ACGTCTTGACAGCTTTGTGCATCCTAATATCACAGAAAGCGTGATCG
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| ABV89647 chloroplast light-regulated protein [Brassica rapa] | 781 | 5e-081 |
| XP_002884230 hypothetical protein ARALYDRAFT_900469 [Arabidopsis lyrata subsp. lyrata] | 730 | 4e-075 |
| AAM64943 unknown [Arabidopsis thaliana] | 698 | 2e-071 |
| NP_565491 protein THYLAKOID FORMATION 1 [Arabidopsis thaliana] | 698 | 2e-071 |
| XP_002275686 PREDICTED: hypothetical protein [Vitis vinifera] | 609 | 4e-061 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SKT0 Protein THYLAKOID FORMATION 1, chloroplastic | 702 | 3e-073 |
| Q7XAB8 Protein THYLAKOID FORMATION1, chloroplastic | 548 | 2e-055 |
| Q84PB7 Protein THYLAKOID FORMATION1, chloroplastic | 526 | 8e-053 |
| B0C3M8 Protein thf1 | 258 | 1e-021 |
| Q116P5 Protein thf1 | 253 | 4e-021 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A8IXS3 Chloroplast light-regulated protein | 781 | 3e-081 |
| B9I6H1 Predicted protein | 599 | 4e-060 |
| C6T9W9 Putative uncharacterized protein | 585 | 2e-058 |
| A7XZB8 Chloroplast-localized protein | 578 | 1e-057 |
| B7FIT6 Putative uncharacterized protein | 573 | 4e-057 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
