Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN16168

FASTA Sequence
Unigene ID: UN16168Length: 988  SNP
GGACCATAATCGGTAAACAAAGAGAACTATTTATGAGAAAAGAATAAAAAGCAAGTTGAAAAGCATAGAAGGCGGTCATACTGAAT
TACTGATAGTGAAAGATAGGCTGGAGGAAATTATTTCTCGAAGAATAAAATATAAAAACCTCGAAATTATTGTCTTCATAATACGA
AAGATCAATTATTCAGCTGAGGAAAGAATAAAGTAATGGGGCGTGTGGATTACCTAGCGATGAAGTCCGACGACGTCGACACGGTT
GCTTTGGTCAACTCCGACGTGGAGGAGCTCAAGATCGCTGCCAAGAAGCTCTTCAGCGATGTCTCGAAGCTTGGTGGATCAGCCTT
TGGTGTTTCTTTCGTCAAATGGATGGCTTGCTTCGCTGCCATTTACTTGTTGATATTGGATCGTACAAATTGGAGAAGCAAGATGC
TTACATCACTCTTGATACCATACATCTTCCTTAGCCTTCCTGGTGTGATTTTCAACTTCCTCAGTGGAGACGTTGGGAAATGGATT
GCGTTCGTTGCAGTTGTGCTCAGACTTTTCTTCCCTAAGCATTTCCCAGATTGGCTAGAGATGCCTGGTTCTCTGATCCTTCTGCT
AGTAGTGTCTCCACATTTTCTAGCTCACCATATACGTGGAACCTGGATTGGCTCTGTCATCGGTCTTTTCATAGGCTGTTACCTTC
TTCAAGAACATATCCGAGTCTCAGGTGGGTTCAGGAATTCGTTCACGCAGCCCCGTGGAGTATCCAACACTCTAGGGATCATCCTT
ATTCTGGTCTACCCTGTTTGGGCTCTAATCGTTCGTGTCACAAAATAGACATTCCCTGTTCCATTTCCCTCAAGTTGTATATGTCT
TGTCTAATAAAATTCCCTAGTGCTCTGCTTCTCTTACATACCCTTATACTACTGTCTCAAGCTCAATCAATGTTCCATATTAGAAA
AAAAAAGAATCTCATTTTTTCAACTATTTGTTTGTACTTATC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_190652 cold-regulated 413-plasma membrane 2 [Arabidopsis thaliana]9716e-103
XP_002877776 COR413-PM2 [Arabidopsis lyrata subsp. lyrata]9546e-101
XP_002310187 predicted protein [Populus trichocarpa]7862e-081
XP_002274881 PREDICTED: hypothetical protein [Vitis vinifera]7736e-080
XP_002522385 COR413-PM2, putative [Ricinus communis]7638e-079

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9SVL6 Cold acclimation protein WCOR413-like protein beta form9714e-103
B9HEK6 Predicted protein7861e-081
B9S8R6 COR413-PM2, putative7636e-079
A9X4J8 Cold acclimation protein COR413-PM16946e-071
B1PB86 Stress responsive protein6911e-070

Arabidopsis top hits (Blast detail)Scoree value
AT3G50830.1 COR413-PM2 (COLD-REGULATED 413-PLASMA MEMBRANE 2)9712e-105
AT4G37220.1 stress-responsive protein, putative6513e-068
AT2G15970.1 COR413-PM15976e-062
AT2G23680.1 stress-responsive protein, putative3289e-031
AT2G23680.2 stress-responsive protein, putative2875e-026

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
114  22%
 
93  17%
 
124  22%
 
107  39%

Unigene MembersMember information