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Information for unigene UN16172
| FASTA Sequence |
| Unigene ID: UN16172 | Length: 1166 |
| SNP | GGGATCACAAAAACCATAACCATCTGTCGCCATGGCAGCCTCTCTCCAATCCGCCGCTACATTTCTCCAGTCGGCGAAAATCGCCA
CTGTTCCTTCTCGTGGCAGTGCTCCCCTCCGGTCGACTCAGACCGTCGGCAAATCATTCGGGTTAGAAACTTCCTCTGCTCGCCTC
ACTTGTTCCTTCCAGTCTGACTTCAAGGACTTCGCCGGTAAATGCTCCGACGCTGTCAAGATCGCCGGATTCGCTCTCGCAACCTC
TGCTCTCGTCGTCTCGGGAGCAAGTGCAGAAGGAGCTCCCAAGAGACTGACTTACGACGAGATACAGAGCAAGACATACATGGAAG
TCAAGGGAACTGGAACGGCTAACCAGTGCCCAACTATTGACGGTGGCTCTGAGACTTTCTCCTTCAAACCGGGAAAGTACGCTGGC
AAGAAGTTCTGCTTCGAGCCTACTTCCTTCACCGTCAAGGCTGAGAGTGTTAGCAAGAATGCTCCTCCTGACTTCCAGAACACCAA
GCTCATGACCCGTCTCACCTACACTCTCGACGAGATCGAAGGCCCCTTCGAGGTTTCTTCTGACGGAAGTGTGAACTTCAAGGAAG
AAGACGGCATCGACTACGCTGCAGTCACTGTCCAGCTTCCAGGAGGCGAGCGTGTGCCCTTCCTCTTCACAGTCAAGCAGCTTGAC
GCCTCAGGCAAACCAGACAGCTTCACTGGCAAATTCTTGGTCCCTTCATACCGTGGCTCCTCCTTCTTGGACCCAAAGGGTCGTGG
TGGATCCACAGGATATGACAACGCAGTTGCATTGCCAGCTGGAGGCAGAGGAGACGAGGAGGAGCTTTCAAAGGAGAACGTCAAGA
ACACGGCAGCTTCAGTGGGACAGATCACTTTGAAAGTGACAAAGAGCAAACCGGAAACTGGAGAAGTGATCGGAGTGTTTGAGAGT
CTTCAGCCGTCGGATACTGACTTGGGTGCCAAGGTACCAAAGGATGTTAAGATCCAAGGGGTGTGGTATGGTCAACTTGAGTGATC
ATGTTATCTATATCAAAACATCTTCTCTGTTAAATTGTATTCGATGATTATGAGAACATCTTTTGATGCTTTCTATGTTTTCTCTC
TTATAAAAATGCAATTCCACCTTATAACGAAATGTATGGTATCAAACC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002866754 oxygen-evolving enhancer 33 [Arabidopsis lyrata subsp. lyrata] | 1650 | 1e-181 |
| NP_201458 oxygen-evolving enhancer protein 1-1 [Arabidopsis thaliana] | 1645 | 6e-181 |
| AAT65501 photosystem II protein [Brassica oleracea] | 1644 | 7e-181 |
| AAM65169 33 kDa polypeptide of oxygen-evolving complex (OEC) in photosystem II [Arabidopsis thaliana] | 1642 | 1e-180 |
| AAL08257 AT5g66570/K1F13_25 [Arabidopsis thaliana] | 1641 | 2e-180 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P23321 Oxygen-evolving enhancer protein 1-1, chloroplastic | 1645 | 2e-182 |
| Q9S841 Oxygen-evolving enhancer protein 1-2, chloroplastic | 1547 | 6e-171 |
| Q40459 Oxygen-evolving enhancer protein 1, chloroplastic | 1417 | 7e-156 |
| P26320 Oxygen-evolving enhancer protein 1, chloroplastic | 1392 | 5e-153 |
| P23322 Oxygen-evolving enhancer protein 1, chloroplastic | 1369 | 2e-150 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q6DV58 Photosystem II protein | 1644 | 5e-181 |
| A9PHA9 Putative uncharacterized protein | 1427 | 7e-156 |
| Q84QE8 Oxygen evolving complex 33 kDa photosystem II protein | 1422 | 3e-155 |
| A9PK45 Putative uncharacterized protein | 1419 | 6e-155 |
| Q58H58 Chloroplast photosynthetic oxygen-evolving protein 33 kDa subunit | 1419 | 6e-155 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G66570.1 PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1); oxygen evolving/ poly(U) binding | 1646 | 2e-183 |
| AT3G50820.1 PSBO2 (PHOTOSYSTEM II SUBUNIT O-2); oxygen evolving/ poly(U) binding | 1553 | 1e-172 |
| AT4G37230.1 oxygen-evolving enhancer protein, chloroplast, putative / 33 kDa subunit of oxygen evolving system of photosystem II, putative | 208 | 9e-017 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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