 |
Information for unigene UN16191
| FASTA Sequence |
| Unigene ID: UN16191 | Length: 1019 |
| SNP | GGATAAATTAATCTACTTCCTTCTCAAAGTATAAATTAGTTTAGCAATAATGAAGAGATAAATATTACAGATATAAAAAGAGATAA
ATTTTGACCAAAAAAATACAAAAAATAAAAAGAGATAAATCTACAATAGACGTGTATTCACACGATCCTCCTAATTAATCTCAACT
TCCCATCATCACACGATTCTTTTTCACCGTTTCATCTTTCTCCTCCTCTTCTCTATATCATTTCATCTTTTCCTTTTCTCTTCTCT
TTCTCCTGCATCGCAATCAAAAACTCTCTGTTCTAGAATTTATATCGAAGATGCCACTGGAGTATACTCCTATATCTCAGCTCAAT
GCGTCTAAGAAGGAATGGAAAATCAGAGTGCTGATCTCGCGGATTTGGGATTACTTTGCCAAATATAAACCTGATGTTGTTCTTGG
AATGGAAGCGATCCTTGTGGATGAAAAGGATTCAAGCTTCTCTGAAACCGAAACTGATTAAAAAATACAAAAGGGAGCTACAAGAA
GGAGAGTATCTAGATGTGATGAATTTTGAAGTAGTGGATAACAATGGTGATTACAGAGGAACCACACATCCTTTCAAGATTAATTT
TATATATACTACATATGCGAAGAAGCCCTCTTAGATGATTCCAAATCTCTCCCGCTTCAACTTAAGCCCCTTTCCAGATATTTTAT
CTCTGTCAAATGTTGATGATGCCTTCATAGACATACTTGGTGAAATTGTTGGCATGGGTCAGATTACCGACAGAAACTATGCTGGA
ATTTAACAAACTGTTGGACATTCAACTACGTGATCTGAGTGAAACAATCATTGATGTACTCTATGGAAAAAACATGCTGAGGATGT
GCACTCTTACGTGAAGAACAACAAAACAGGTCCTGTTATCTTGCTTGGAAGTCTCATGAGGACCAAAAAATTCAATGATACGTAAT
CATTTTCTAAGTTTATGTATTAACGTAACAAAGTACATTTTTTTTAATAACAGATTTAACAATAGTTTAACAT
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002874648 hypothetical protein ARALYDRAFT_352148 [Arabidopsis lyrata subsp. lyrata] | 312 | 2e-026 |
| XP_002867275 hypothetical protein ARALYDRAFT_913278 [Arabidopsis lyrata subsp. lyrata] | 259 | 2e-020 |
| NP_680253 uncharacterized protein [Arabidopsis thaliana] | 191 | 2e-012 |
| ABD28510 Nucleic acid-binding, OB-fold, subgroup [Medicago truncatula] | 159 | 9e-009 |
| NP_850486 Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana] | 158 | 1e-008 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q3E8V5 Putative uncharacterized protein At5g28885.1 | 191 | 1e-012 |
| Q2HVD7 Nucleic acid-binding, OB-fold, subgroup | 159 | 6e-009 |
| Q2HSY3 Nucleic acid-binding, OB-fold, subgroup | 155 | 2e-008 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G28885.1 unknown protein | 191 | 7e-015 |
| AT2G05642.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Protein of unknown function DUF223, Arabidopsis thaliana (InterPro:IPR003871); BEST Arabidopsis thaliana protein match is: replication protein-related (TAIR:AT1G52950.1); Has 317 Blast hits to 292 proteins in 67 species: Archae - 0; Bacteria - 13; Metazoa - 20; Fungi - 36; Plants - 193; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink). | 158 | 5e-011 |
| AT1G52950.1 replication protein-related | 126 | 2e-007 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
