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Information for unigene UN16191
FASTA Sequence |
Unigene ID: UN16191 | Length: 1019 |
| SNP | GGATAAATTAATCTACTTCCTTCTCAAAGTATAAATTAGTTTAGCAATAATGAAGAGATAAATATTACAGATATAAAAAGAGATAA
ATTTTGACCAAAAAAATACAAAAAATAAAAAGAGATAAATCTACAATAGACGTGTATTCACACGATCCTCCTAATTAATCTCAACT
TCCCATCATCACACGATTCTTTTTCACCGTTTCATCTTTCTCCTCCTCTTCTCTATATCATTTCATCTTTTCCTTTTCTCTTCTCT
TTCTCCTGCATCGCAATCAAAAACTCTCTGTTCTAGAATTTATATCGAAGATGCCACTGGAGTATACTCCTATATCTCAGCTCAAT
GCGTCTAAGAAGGAATGGAAAATCAGAGTGCTGATCTCGCGGATTTGGGATTACTTTGCCAAATATAAACCTGATGTTGTTCTTGG
AATGGAAGCGATCCTTGTGGATGAAAAGGATTCAAGCTTCTCTGAAACCGAAACTGATTAAAAAATACAAAAGGGAGCTACAAGAA
GGAGAGTATCTAGATGTGATGAATTTTGAAGTAGTGGATAACAATGGTGATTACAGAGGAACCACACATCCTTTCAAGATTAATTT
TATATATACTACATATGCGAAGAAGCCCTCTTAGATGATTCCAAATCTCTCCCGCTTCAACTTAAGCCCCTTTCCAGATATTTTAT
CTCTGTCAAATGTTGATGATGCCTTCATAGACATACTTGGTGAAATTGTTGGCATGGGTCAGATTACCGACAGAAACTATGCTGGA
ATTTAACAAACTGTTGGACATTCAACTACGTGATCTGAGTGAAACAATCATTGATGTACTCTATGGAAAAAACATGCTGAGGATGT
GCACTCTTACGTGAAGAACAACAAAACAGGTCCTGTTATCTTGCTTGGAAGTCTCATGAGGACCAAAAAATTCAATGATACGTAAT
CATTTTCTAAGTTTATGTATTAACGTAACAAAGTACATTTTTTTTAATAACAGATTTAACAATAGTTTAACAT
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GenBank top hits (Blast detail) | Score | e value |
XP_002874648 hypothetical protein ARALYDRAFT_352148 [Arabidopsis lyrata subsp. lyrata] | 312 | 2e-026 |
XP_002867275 hypothetical protein ARALYDRAFT_913278 [Arabidopsis lyrata subsp. lyrata] | 259 | 2e-020 |
NP_680253 uncharacterized protein [Arabidopsis thaliana] | 191 | 2e-012 |
ABD28510 Nucleic acid-binding, OB-fold, subgroup [Medicago truncatula] | 159 | 9e-009 |
NP_850486 Nucleic acid-binding, OB-fold-like protein [Arabidopsis thaliana] | 158 | 1e-008 |
Swiss-Prot top hits | Score | e value |
No hits found | | |
TrEMBL top hits (Blast detail) | Score | e value |
Q3E8V5 Putative uncharacterized protein At5g28885.1 | 191 | 1e-012 |
Q2HVD7 Nucleic acid-binding, OB-fold, subgroup | 159 | 6e-009 |
Q2HSY3 Nucleic acid-binding, OB-fold, subgroup | 155 | 2e-008 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT5G28885.1 unknown protein | 191 | 7e-015 |
AT2G05642.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Protein of unknown function DUF223, Arabidopsis thaliana (InterPro:IPR003871); BEST Arabidopsis thaliana protein match is: replication protein-related (TAIR:AT1G52950.1); Has 317 Blast hits to 292 proteins in 67 species: Archae - 0; Bacteria - 13; Metazoa - 20; Fungi - 36; Plants - 193; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink). | 158 | 5e-011 |
AT1G52950.1 replication protein-related | 126 | 2e-007 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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