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Information for unigene UN16222
| FASTA Sequence |
| Unigene ID: UN16222 | Length: 1036 |
SSR | | GGGGCAGTTAATGGGAAGCTAACACTTGATTACCAGGGAACAGAGATCTGCCTCGAGCGGCCTTGGAGGAGAGAAACCATGCATAA
CCTCGTTAAAGAGGCAACAGGAATCGATTTCAATGAGCTAGGGGGAGATCTTGGAAATGCTAAAGACACAGTTCTGCTGGCACTTC
AAGACGTGCTTGAGCACAAGGACAAATCTGGAATTGGAGCTTGCTCTTCTCTCGGCCATCTTCTTAACGAGGTTTTTGAAGTTGTT
GTAGAGCCAAAGCTTGTGCAGCCAACTTTTGTATTGGACTACCCAATCGAGATATCTCCCTTGGCCAAGCCACATCGCGGTAATGC
AGGTTTGACTGAAAGATTTGAGCTGTTCATCTGTGGCCGTGAAATGGCAAACGCATTCTCTGAATTGACTGATCCTGTGGACCAGA
GGAGGCGGTTGGAAGAGCAAGTAAGGCAGCATAACGCAAAGCGAGCAGCGGCTGCATCAGAGACTCCTGAGCAAAAGGCAAAGAAA
GATGATGATGATGATGATGATGACGATTCATATGAAGTGACACTAGACGAAGACTTTCTCACTGCCCTGGAATACGGAATGCCTCC
TGCCTCTGGAATGGGGCTTGGTATTGACAGGCTGGTGATGCTGTTGACAAACTCTGCGAGTATAAGAGACGTCATTGCGTTTCCTG
TTCTGAAAGTTCAGCAGTAACACTTATGCCGAACTTGGTAATACATGTTTGTAGTCTTAGCATTTCTCTGTGTATCTTTTGGGTTA
TTTCTCCAGCAGAGGAGGTTGGAAGAAGCATACGCAATTAGATAGCAAAAAATCAAATCCAATGATTTTATTCTTGATGCATGTAT
TAGACCACATGTTGAGGGTGTACTGAATAAACAATGGTTCAGTTTTCTTGCAAGAAAAAAGAAGCTTCACGCTCTCTACTCTCTTG
CTTTTACTGATTTGCTAATTGATTATGGACAAGATATGATCTCCTGTTGTTTAGGTTAGGGACAAAGCTAATACAAAAGGAACTTT
AACC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_187958 Lysyl-tRNA synthetase, class II [Arabidopsis thaliana] | 1076 | 4e-115 |
| XP_002884969 hypothetical protein ARALYDRAFT_478735 [Arabidopsis lyrata subsp. lyrata] | 1070 | 2e-114 |
| XP_002523412 lysyl-tRNA synthetase, putative [Ricinus communis] | 934 | 1e-098 |
| XP_002285737 PREDICTED: hypothetical protein [Vitis vinifera] | 908 | 1e-095 |
| CAN72569 hypothetical protein VITISV_036995 [Vitis vinifera] | 907 | 2e-095 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8DMA9 Lysyl-tRNA synthetase | 339 | 6e-031 |
| P73443 Lysyl-tRNA synthetase | 319 | 1e-028 |
| Q8YPW9 Lysyl-tRNA synthetase | 304 | 6e-027 |
| Q31KH4 Lysyl-tRNA synthetase | 303 | 8e-027 |
| Q5N1D9 Lysyl-tRNA synthetase | 303 | 8e-027 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LJE2 Lysyl-tRNA synthetase | 1076 | 3e-115 |
| B9SBP3 Lysyl-tRNA synthetase | 934 | 9e-099 |
| A5BPH5 Lysyl-tRNA synthetase | 907 | 1e-095 |
| Q6K1T2 Lysyl-tRNA synthetase | 830 | 1e-086 |
| C5WTY1 Lysyl-tRNA synthetase | 814 | 7e-085 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G13490.1 OVA5 (OVULE ABORTION 5); ATP binding / aminoacyl-tRNA ligase/ lysine-tRNA ligase/ nucleic acid binding / nucleotide binding | 1088 | 7e-119 |
| AT3G11710.1 ATKRS-1 (ARABIDOPSIS THALIANA LYSYL-TRNA SYNTHETASE 1); ATP binding / aminoacyl-tRNA ligase/ lysine-tRNA ligase/ nucleic acid binding / nucleotide binding | 200 | 6e-016 |
| AT3G30805.1 ATP binding / aminoacyl-tRNA ligase/ lysine-tRNA ligase/ nucleotide binding | 130 | 9e-008 |
| AT4G33760.1 tRNA synthetase class II (D, K and N) family protein | 122 | 7e-007 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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