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Information for unigene UN16228
| FASTA Sequence |
| Unigene ID: UN16228 | Length: 1623 |
| SNP | ATGAATTATGAACTGTTCATATATGTATGTAAAAATTATCAAAATATCTGGTAACTTGAGTAAGAAAACTCATCAAGACATGGTTT
TGTCACACAGCTTCCATAGGCTGTATATAGCCAAAGAGTGAGAGAAGCCAATGTGTGCATAATCACAAAATTGATCTTATTGGGAT
ATTGTATGGCAAACTCACACTTCTAAAACAACAAAACATGGGAAAAGGAAAGCCTAACACTCTCTAGTCTCAAGCCGGCATAGAAA
CCATATGGTGAGTGATCGGTATCCAAACCCAATTAACCAAAGAAAGAGGTCTCTAAATTTAACACCATCTCCACATTCATCATCTT
CAAGCAGTTTGAGCAACTGGTTCATCAGATGCTTCAAGCCTTTCTATTCCTTCCCCAACCTCAACTCTCAGAAAATCGGCAACCTT
CACAGGAGAACCCACCTCCTTGGACAAATTATCCACCAATGTCTTTATGTTAATAGAATCGTTCACAATGAACTTTTGCTCCATTA
GAGCAACTTCTTCGAAATATTTACGGAGGCCTTCCACCATCTTCTCCACAGCCATCTGAGACTTGGCTGTACTTTCTGCCTGAGAT
TTGAGAATCTCCCGTTCGTTTGCTAATGCTTCAGAAGAAACGAGGTCTTTGCTTAAAAATAAAGGCTTTGCTGCTACAACATGCAT
GGCCATTTCTGAGCCTACACGTTGAAGAGCCTCTAGTTGAGTGTTTCCACCTTCTACTTCGAGAGATACAATCCCAGCGATACGAC
CCAACCCTGGTTGGGGACTTGTGTGGAGATATGCAGAGAGGACGCCTGTTGAAGATTTTGACATTAAGAAACCTCTCCTAAACTTG
ACATTCTCTCCCATTATCGCAGCTACTTCTGTAGCAGCGTTTGAAACTGTGGTTTCACCATTCACTTTTGGATGGTCGAGATTGAG
CTTCAACTCCTCAAAAAGCTCAGGGCCAAAGGGGAAGACACCAGGAACTTGCTGAGAACTGTTATCAACCAGCAAAGCACGTTTTG
CCATAGCTAAAGCCAAGTACTGGAAGATGTCGTTCCTAGCCACAAAGTCTGTCTCGCAGTTCAGTTCGATAACAGCAACTCTTCCC
TCGTTCTGGGCAACAGCAAGCATACCCTCTGCAGCTGTCCGTGACGACTTTTTGGAAGCCAGTACTTTGCCTCTCTTCCTCAAATC
CTTCTGAGCAGCCTCAATGTCCCAATTGCATTCAACAAGAGAAGCCTTAACATCTTTAATAGGAGCACTAGTTCTTTGCCTCAGTT
GCTTGATGAGGCTCATCTGGTCAACTCCAGCAGGAGCCTCCGAACTAAAACTCCTCAACAAGTTCCCGAAACCACCAACAGGGCTC
CTGTACTGAGACAGACTTTCGAATTTGCTTGAGTACTCATTTCCACAGCTGAACCTACGACTAGCACTGTAAAGAAAGACTCCAAG
GGGTCGTCTCGCTGCCCTAGAATACGCCATTTTTTTTTCTTTTGCAAAACCGAGGTGTAAGAGTTGCGTTCTTTGCGTCGTTGGTG
AAAATCGATACTAGAAAGAGATCGAGGAGATCGTAGAAATGGGAGCGACCGATGAGGGATTTGTTTGGTTACTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_192850 putative translation elongation factor Ts [Arabidopsis thaliana] | 1560 | 6e-171 |
| XP_002872550 hypothetical protein ARALYDRAFT_489950 [Arabidopsis lyrata subsp. lyrata] | 1546 | 3e-169 |
| AAC35534 similar to elongation factor EF-Ts [Arabidopsis thaliana] | 1500 | 6e-164 |
| XP_002524565 elongation factor ts, putative [Ricinus communis] | 1320 | 4e-143 |
| XP_002320543 predicted protein [Populus trichocarpa] | 1232 | 7e-133 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| A6X0J2 Elongation factor Ts | 239 | 4e-019 |
| B7KZG1 Elongation factor Ts | 233 | 2e-018 |
| A9W4G4 Elongation factor Ts | 233 | 2e-018 |
| B1ZLB6 Elongation factor Ts | 232 | 3e-018 |
| B9JEX1 Elongation factor Ts | 231 | 3e-018 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q5XF75 Elongation factor Ts | 1560 | 4e-171 |
| O82505 Elongation factor Ts | 1500 | 4e-164 |
| B9SEZ6 Elongation factor Ts | 1320 | 3e-143 |
| B9IAX7 Elongation factor Ts | 1232 | 5e-133 |
| Q9SWW0 Elongation factor Ts | 1194 | 1e-128 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G11120.1 translation elongation factor Ts (EF-Ts), putative | 1561 | 2e-173 |
| AT4G29060.1 emb2726 (embryo defective 2726); RNA binding / translation elongation factor | 195 | 4e-015 |
| AT4G29060.2 emb2726 (embryo defective 2726); RNA binding / translation elongation factor | 192 | 1e-014 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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