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Information for unigene UN16244

FASTA Sequence
Unigene ID: UN16244Length: 2014 SSR 
AGTTTAAAACCCATAGGAGGTCTATTTGTTTATTCCGAGTTTAAGCATACGTTTCTTTCAAGAACAAGCACTGTTTCCATATATTA
AAAGAGTTTTTGAGTCGATGTTGCTTACAAAAAATGCGTACCAAAAAGATTAAAGGGATTGAGGACTAGTAGAAGGTCTGATCATG
GAAGGCATTTTCATAAGTCTGTCTCTTTCCATCTTGTTCTTGAAAGAGTGCTTAGGCGTTATGGACATCTTGTCCATTGCGTAATC
AAGATCACCTTCTTCCTCCTCTTCTTCATCACTCTCCTCATCCCCATTCACAATTATCTCAGCATCGTCACATCATCATCGTCATC
TTGGTTCATCACCGTTGACCAGTAGATGAAATTCGGGGAGATGACGCTGTTAGATCTTTTCAGCAAGTAAGGGTCAAAGGGGAAGA
ATGTATCAAGTCTCTCACGCCCGCCAAACGCACGAGAAAGCTCAGACTCAAGCAGGTCATCGAAAATGAAGGAGTCTGAGACGACG
AACAGACCAACTGCTTTAGCTTGTTTAAGGAACTCTGCAACTACCGATGGAAGGCATACCATCAATGGGTTTAGTTTGTGCATTAA
AATTGACTCCAATGGTATAAGCTCGGACCGAAAGCGAGGAACATCTAGGATGGATCTCATACGGAAGCACAGCACATACATGATCG
CCTGACATCCTGAATAGAAAAGCTGATGTGCTTCAGGCCTTGTATCATCATTGCAGATTCTACAGTAATCCGCACACTCATCTACT
AACCTTTTTAACATGCTAGCCACATAGGAAACAGGTAAAAACTTTCCGCGAGCCAAGTAGCTAGCTAGATAAGCCACCGCACTCAT
CCTAGTAGGTCGAGGCTTGTTGCTGGAGAGAAAAATGTCCAGCAGCTTACTCCCAAATTTCACACCACAATTTTCAGGATCCAGTG
AACATGCATAGAACATGAGAAACTGGGAAACTTTGGATTTGTAGGTATTCAGGATGAAGTTCTCAAATGACTCGAAGAGCTTTTCA
AACACCTGATCCAAACGACCAGCATCTTGACAGGATTCAAGATGATCAAAAGATGTGACCATCAATTTGTCCAACGACTCAAAAGC
TATCTTTCCACTTGATGTATCCTGATTTACAGACCCCGCTGGAAGCTCGTCTCCTTCATTCATACCATCTTCAAGTTCCATATCAA
ACATGCCTCTACTAGAGTCATCTTGCGGAATATCATCCCAATCAATCTCCAAATCCAAATCTCGTAGCCTCTCCATCACCATCATA
AAGATCATGTTGCCACCAACTTGACCGATTGAGCTACTCTCCAACTTCAATAAGTTCTCCACATAAGTCACTACCACCTGGTCCTG
GTCTTTTTGTTCATTTTGGGCATCTGCTGGGAGAGCATGGGGAATAGTCTCGAGGGAGCAAGAGGAACCAAAAGAGAGATCTCCAG
AAGAGCCTCATGAACGCGAGAAAGAACTTCTCCCTTCTGGGTGCTTACACGGCTTTGTGAAAGTCTATTGATTACCCAAGGCGGTG
GAACGAAGTGTCTTACGAGCATATGCAGACAAGAGTCCAGATACTTTCCACTGGTGGCAGCCAGTGATATGAGTAGGCCCACCAAT
GCATCCATGATAAGAGGTCTCTGATTCCACAATGACATTCCAAATATCGCAGAGAGAAGCTTTTGATGGTGAGTGATATCTATGCA
AGCCACAGAGCCTGATAAAGCTTTCAAGAGTGTATTAAGCTCAGCAGCAGCAGCAGCATCAGATCTATCGTTGATCTGAATTGTTT
CAACAAGCTGGTCGAAACGGTCTGATTCCCCATTCTGGGCAGATGCAAGGGCGTTTCTCACGCCCTGCACCGTTTCAGTGTCACAC
GAATCATTGTTGCCCACATCATATAAGCTTGACGGATCAGTAAAAACCTCTGCTGCTCCCATCCTCTTGTGTGATTTGTTTTTACC
TACAGGTTTAATAATTGAAGTAGCTTTTGTTTCGCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_850236 RNA polymerase I specific transcription initiation factor RRN3 protein [Arabidopsis thaliana]14773e-161
BAF01881 hypothetical protein [Arabidopsis thaliana]14667e-160
XP_002881355 RNA polymerase I specific transcription initiation factor RRN3 family protein [Arabidopsis lyrata subsp. lyrata]14362e-156
XP_002893635 predicted protein [Arabidopsis lyrata subsp. lyrata]13781e-149
NP_174347 RNA polymerase I specific transcription initiation factor RRN3 protein [Arabidopsis thaliana]12946e-140

Swiss-Prot top hits (Blast detail)Scoree value
Q10110 RNA polymerase I-specific transcription initiation factor rrn33434e-031

TrEMBL top hits (Blast detail)Scoree value
Q8L643 Putative uncharacterized protein At2g3475014772e-161
Q0WLX6 Putative uncharacterized protein At2g34760 (Fragment)14664e-160
Q9SA74 T5I8.4 protein12399e-134
Q1PEV9 RNA polymerase I specific transcription initiation factor RRN3 family protein9728e-103
B9SEL3 Transcription initiation factor ia, putative9612e-101

Arabidopsis top hits (Blast detail)Scoree value
AT2G34750.1 RNA polymerase I specific transcription initiation factor RRN3 family protein14771e-163
AT1G30590.1 RNA polymerase I specific transcription initiation factor RRN3 family protein12942e-142
AT2G39240.1 RNA polymerase I transcription factor/ binding9724e-105

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
122  33%
 
94  67%

Unigene MembersMember information