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Information for unigene UN16249
| FASTA Sequence |
| Unigene ID: UN16249 | Length: 1009 |
SSR | | AACACAAAGCATCACAGAAATGATGAAGAAGAGTCGGGGCTAAGCTAAAGATGAATGGGTCAATAAAAGCCCATTAAAACCTGTTC
TTACTCTGGATTAAAGTTGTAATATATGCTAAGAAATAAAGAATCTCTAACACAAGAGAAGAAAGAACAAGTAGCATTGACAGAAT
ACAAGGGAGATAATAATAGTAGCACCCCACCAAAATCCAAAATGGGTGGGGGTGGGTTTATTTCTTAGCATAGGTGATGTGCATAG
GGGTTTGGTGAATGGTGAAACCTTCAAGACCGTGCATAGCAGCGGTAGACTGCATCTCATCAGAAAACTCAACGAAAGCAATACCA
GGCTTGGCTGCAACCATCCTAACCTCCTTGAAGCCATGGTAATTGCCGAAGAGTTCCTGAAGCCTCTCAGGAGTTGTGTCGTGAGG
AAGGTGTTGGACAAAGAGGATGTTGTTCGGGGGTGCCGGTGCTTCGGGAAGATTGCTTTTGACACCACCACCACCACCACCACCAG
GGTATGGTACTTGGGAAAGAGGAGGGGCGGATCCATAGACACCAGGATACGGTGGGATGGGCATACGTGTATTATCATGGTGCTGC
TCTTTCTTTTTCTTACCACCTTTCTCCTCGTGTCGCTTTCGTTTCTCGCGAGGAACAAAGGTGCCGTCAGCCTTGGCAATAACATC
TGATTTCGTTTTTGCAAATTGTATTCTCATGGGTTTGTCGTAGAAGGGGAATCCATTCATCTTGGAAATAGCATTGGAAGCAGATT
CAGGATTGTCGAACACAACCCAAGCTTGCCCTTTGTGCTTCAATGTCTTAAACGCCAACACCTCCACTATCTTCCCGTACTGCGAG
AAAACCGCATTTAGCGACTTCTTCAGCTCATCGAGCTTGACTTTTTCGTTGAGATTATTGATGTAAATCGTCTGGTTTGGAGACGA
AACCTCCGATCCAGCTTTATTTGCTGCCGCTGCCGCCTCCTCCTGCTCTTGCATCATCATCCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_182280 spliceosomal protein U1A [Arabidopsis thaliana] | 991 | 3e-105 |
| XP_002880313 hypothetical protein ARALYDRAFT_483938 [Arabidopsis lyrata subsp. lyrata] | 988 | 7e-105 |
| XP_002523100 small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis] | 881 | 2e-092 |
| ABK94716 unknown [Populus trichocarpa] | 868 | 6e-091 |
| XP_002270967 PREDICTED: hypothetical protein [Vitis vinifera] | 857 | 1e-089 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q54J05 U2 small nuclear ribonucleoprotein B'' | 445 | 3e-043 |
| P45429 U1 small nuclear ribonucleoprotein A | 370 | 1e-034 |
| P09012 U1 small nuclear ribonucleoprotein A | 368 | 2e-034 |
| Q06AA4 U1 small nuclear ribonucleoprotein A | 367 | 3e-034 |
| Q2KIR1 U1 small nuclear ribonucleoprotein A | 366 | 4e-034 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q39244 At2g47580/T30B22.12 | 991 | 2e-105 |
| B9SAT1 Small nuclear ribonucleoprotein U1a,U2b, putative | 881 | 1e-092 |
| A9PEB3 Putative uncharacterized protein | 868 | 4e-091 |
| B7FJ52 Putative uncharacterized protein | 849 | 6e-089 |
| B9GSB4 Predicted protein | 849 | 6e-089 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G47580.1 U1A (SPLICEOSOMAL PROTEIN U1A); RNA binding / nucleic acid binding / nucleotide binding | 997 | 2e-108 |
| AT2G30260.1 U2B'' (U2 small nuclear ribonucleoprotein B); RNA binding / nucleic acid binding / nucleotide binding | 371 | 9e-036 |
| AT1G06960.1 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative | 370 | 1e-035 |
| AT1G06960.2 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative | 370 | 1e-035 |
| AT1G06960.3 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative | 272 | 3e-024 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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