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Information for unigene UN16249

FASTA Sequence
Unigene ID: UN16249Length: 1009 SSR 
AACACAAAGCATCACAGAAATGATGAAGAAGAGTCGGGGCTAAGCTAAAGATGAATGGGTCAATAAAAGCCCATTAAAACCTGTTC
TTACTCTGGATTAAAGTTGTAATATATGCTAAGAAATAAAGAATCTCTAACACAAGAGAAGAAAGAACAAGTAGCATTGACAGAAT
ACAAGGGAGATAATAATAGTAGCACCCCACCAAAATCCAAAATGGGTGGGGGTGGGTTTATTTCTTAGCATAGGTGATGTGCATAG
GGGTTTGGTGAATGGTGAAACCTTCAAGACCGTGCATAGCAGCGGTAGACTGCATCTCATCAGAAAACTCAACGAAAGCAATACCA
GGCTTGGCTGCAACCATCCTAACCTCCTTGAAGCCATGGTAATTGCCGAAGAGTTCCTGAAGCCTCTCAGGAGTTGTGTCGTGAGG
AAGGTGTTGGACAAAGAGGATGTTGTTCGGGGGTGCCGGTGCTTCGGGAAGATTGCTTTTGACACCACCACCACCACCACCACCAG
GGTATGGTACTTGGGAAAGAGGAGGGGCGGATCCATAGACACCAGGATACGGTGGGATGGGCATACGTGTATTATCATGGTGCTGC
TCTTTCTTTTTCTTACCACCTTTCTCCTCGTGTCGCTTTCGTTTCTCGCGAGGAACAAAGGTGCCGTCAGCCTTGGCAATAACATC
TGATTTCGTTTTTGCAAATTGTATTCTCATGGGTTTGTCGTAGAAGGGGAATCCATTCATCTTGGAAATAGCATTGGAAGCAGATT
CAGGATTGTCGAACACAACCCAAGCTTGCCCTTTGTGCTTCAATGTCTTAAACGCCAACACCTCCACTATCTTCCCGTACTGCGAG
AAAACCGCATTTAGCGACTTCTTCAGCTCATCGAGCTTGACTTTTTCGTTGAGATTATTGATGTAAATCGTCTGGTTTGGAGACGA
AACCTCCGATCCAGCTTTATTTGCTGCCGCTGCCGCCTCCTCCTGCTCTTGCATCATCATCCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_182280 spliceosomal protein U1A [Arabidopsis thaliana]9913e-105
XP_002880313 hypothetical protein ARALYDRAFT_483938 [Arabidopsis lyrata subsp. lyrata]9887e-105
XP_002523100 small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]8812e-092
ABK94716 unknown [Populus trichocarpa]8686e-091
XP_002270967 PREDICTED: hypothetical protein [Vitis vinifera]8571e-089

Swiss-Prot top hits (Blast detail)Scoree value
Q54J05 U2 small nuclear ribonucleoprotein B''4453e-043
P45429 U1 small nuclear ribonucleoprotein A3701e-034
P09012 U1 small nuclear ribonucleoprotein A3682e-034
Q06AA4 U1 small nuclear ribonucleoprotein A3673e-034
Q2KIR1 U1 small nuclear ribonucleoprotein A3664e-034

TrEMBL top hits (Blast detail)Scoree value
Q39244 At2g47580/T30B22.129912e-105
B9SAT1 Small nuclear ribonucleoprotein U1a,U2b, putative8811e-092
A9PEB3 Putative uncharacterized protein8684e-091
B7FJ52 Putative uncharacterized protein8496e-089
B9GSB4 Predicted protein8496e-089

Arabidopsis top hits (Blast detail)Scoree value
AT2G47580.1 U1A (SPLICEOSOMAL PROTEIN U1A); RNA binding / nucleic acid binding / nucleotide binding9972e-108
AT2G30260.1 U2B'' (U2 small nuclear ribonucleoprotein B); RNA binding / nucleic acid binding / nucleotide binding3719e-036
AT1G06960.1 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative3701e-035
AT1G06960.2 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative3701e-035
AT1G06960.3 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative2723e-024

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
93  60%
 
71  20%
 
61  20%

Unigene MembersMember information