RadishBase

| | | |

Information for unigene UN16263

FASTA Sequence

Unigene ID: UN16263	Length: 852	SSR	SNP
GGACTGATTCTCCTTTAATCCAAAAGATAATAATAATAACACTTAAGAGTAAGATTGAGCTTCTGATTTGTTTCTCAAACAATACA AAACATTGCTGGGTCTCTGTGATCGAAGTGCCAGAGCCATGGCTTCCCTTTCAATCACTTCCTCTTCGACAATCATCAATTCTAGA GCTTCTCCTCTTCCTAGACAAGCCTCCACCTCTTCTCCGTCGTGTATTTCCCTTCCCATGCTTCCTCCTCAGCCGCTTCAGTCCAC TGCTTACTGTCGGAAGATTGCGAGGAACGTTCTGACAAGAGCTACCGAAGTTGAAGCTTCGGTCACTGCCGACGCTGACACTACAG AGTTGCCAGAAATCGTCAAGACCGCTCAAGAAGCTTGGGAGAAAGTGGAGGACAAGTATGCAATTGGTTCTCTCGCATTTGCTGCT TTGTTGGCTCTTTGGGGTTCTACTGGCCTCATCTCGGCAATCGACAGGCTTCCATTGTTTCCAGGTGTTTTTGAACTTGTAGGCAT TGGTTACACTGGGTGGTTTGCTTACAAGAATCTGATCTTCAAACCAGACAGGGAGGTGCTGTTTCAGAAGATCAAAGACACATACA GAGACATACTAGGGAGCAGCAGCTGAATCAGAGGAAGAATGAGAGCAGCTGAATCGAAGAATCTAACACATGTCTATGTCTCTCTG TGCTCCTTGTAGCTTAATATACCATGCGTCTTATATCAGTGTTGTAGATTCCATCATCTCTCTCTCTCTGCTCTCCTTGTAGCTCA AATATCATCCATTTTATGTTGTAAATTCCTCAAGACTATGCAATGATGAGATATTTCATTCTCAAGTTTTCAATTTTC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002880267 hypothetical protein ARALYDRAFT_483848 [Arabidopsis lyrata subsp. lyrata]	635	4e-064
NP_566086 thylakoid membrane phosphoprotein [Arabidopsis thaliana]	610	3e-061
AAM63765 unknown [Arabidopsis thaliana]	606	1e-060
ABK95200 unknown [Populus trichocarpa]	561	2e-055
XP_002320236 predicted protein [Populus trichocarpa]	561	2e-055

Swiss-Prot top hits (Blast detail)	Score	e value
Q8LCA1 Thylakoid membrane phosphoprotein 14 kDa, chloroplastic	610	2e-062
O04616 Uncharacterized protein At4g01150, chloroplastic	220	3e-017

TrEMBL top hits (Blast detail)	Score	e value
A9PFP7 Putative uncharacterized protein	561	1e-055
B9I954 Predicted protein	561	1e-055
A5C9J2 Putative uncharacterized protein	533	2e-052
A9PJN6 Putative uncharacterized protein	521	5e-051
B9GRR8 Predicted protein	521	5e-051

Arabidopsis top hits (Blast detail)	Score	e value
AT2G46820.1 PSI-P (PHOTOSYSTEM I P SUBUNIT); DNA binding	610	1e-063
AT2G46820.2 PSI-P (PHOTOSYSTEM I P SUBUNIT); DNA binding	610	1e-063
AT1G52220.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PSI-P (PHOTOSYSTEM I P SUBUNIT); DNA binding (TAIR:AT2G46820.2); Has 203 Blast hits to 203 proteins in 35 species: Archae - 0; Bacteria - 66; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).	241	9e-021
AT1G52220.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PSI-P (PHOTOSYSTEM I P SUBUNIT); DNA binding (TAIR:AT2G46820.2); Has 203 Blast hits to 203 proteins in 35 species: Archae - 0; Bacteria - 66; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).	229	2e-019
AT4G01150.1 unknown protein	220	2e-018

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	6			15%


10	7			18%


7	14			36%


9	7			18%


8	5			13%

Unigene Members	Member information