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Information for unigene UN16276

FASTA Sequence
Unigene ID: UN16276Length: 1384 SSRSNP
TAGAAAACACATTTGTCCGAGTTTCGTTCGACAGCTGCGCCTTCAAGAAATCGAAAGAGAACTTCTTCATTTTTCTTCGTTCTTTC
TACGATTCGATTCCAAAGTATCTCTATCAGGTCAACGTTCTTCTTTGTGGCATTGAGGGGGAGAGAGAGATGTCTGATCACCTGAG
TTCATGTACGGACCGTCTCGTAACATCTGATCACCTGAATTCAGACAGAGGAGGATCCATTGAATCTTCTGGAGAAAGTTCCAGAG
GTCAAGGCACCACAATCATTTCTTCTACTACGACTACTACTATTACTAAATCTGTGGATGATAAAACTATGCAAGTAGAAGAGCTT
GATGTCGTTGACGAAGAGGAACCGCTTATCCAATCAGCTGAATGCCGTATATGCCAAGATGAGGATTCTGTTAAGAACCTCGAGTC
TCCCTGTTCTTGTAGCGGCAGCTTGAAGTATGCACATCGGAAGTGTGTTCAGCGTTGGTGTAATGAGAAAGGTGACACTATCTGTG
AAATATGCCACAAGTCTTATCAACCTGGCTACACCGCTCCACCACCTCCTCCCGCTGAAGATACTGTTATCGATATCGGTGAAGAT
TGGGCCAATGGTGTTCCCTTAGACTTCAACGACCCTCGCATTTTTGCAATGGCGGCTGCAGAACGCCGTTTCTTTGATCCGGACTA
TGACGAGTATGCTGATTCTAACTCTAGCGGTGCTGCTTTCCTTCGCTCCGCTGCTCTTATCTTAATGGCGCTTTTATTGCTGCGAC
ACGCCATGAACCTTTCAAACAACAACAACTCAGACAACGAAGAAGAAGATGATCCATCAGCTTTCTTCTTTCTTTTCATGCTCCGT
GCTGCCGCTTTTCTCCTCCCTTGTTACATAATGGCTTGGGCCATCAGTATCTTACAACGCCGAAGACAAAGACAGGAAGCAGCCGC
TCTAGCTGCTGCAGAAGTTGCGTTTATGCTACACAACGGGGCTGGCGGTGGAGGACAGCGCAGAGGAGGATTGCATTTCGCTGTAG
CACCCGAGCTGATACCGAATCCACAACACCAGCCTGAAGCCTCACCACAATGATTATATATATCCCTGAGTACCGGTTAAAGAATC
CAAAGTATCATCATTATCCACGACTTTGGTCTCTTCTCTCTTCTCTCTCTCTCTTTCACTGTTTGTAGTAGCTGTTTGTTGTTTAT
GGGTTTATTCCTATGAGCAAAAACACAGAAACTGAGTAAAACAAAATACGGGAAGTCTCTCTGTCTTATGTTCTTACAGACGAGAA
AATAAAGCTTCTTGATATGCTTATGTATATATACTTAATACTTGAGAAATTACCAACGATCTTAAGAAGATATTCAACATATGTAT
TCGCTATG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_568953 RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana]13061e-141
XP_002864796 hypothetical protein ARALYDRAFT_496422 [Arabidopsis lyrata subsp. lyrata]12773e-138
XP_002875846 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]10069e-107
NP_190339 RING/FYVE/PHD zinc finger-containing protein [Arabidopsis thaliana]9915e-105
ADA67984 RING-type E3 ubiquitin ligase [Brassica napus]9494e-100

Swiss-Prot top hits (Blast detail)Scoree value
Q32L65 E3 ubiquitin-protein ligase MARCH21382e-007
A0JN69 E3 ubiquitin-protein ligase MARCH31382e-007
Q86UD3 E3 ubiquitin-protein ligase MARCH31382e-007
Q8BRX9 E3 ubiquitin-protein ligase MARCH31382e-007
Q5XIE5 E3 ubiquitin-protein ligase MARCH31382e-007

TrEMBL top hits (Blast detail)Scoree value
Q9FJJ6 AT5g62460/K19B1_713061e-141
Q9SN83 Putative uncharacterized protein At3g475509913e-105
D2KC47 RING-type E3 ubiquitin ligase9492e-100
A5C5T5 Putative uncharacterized protein8401e-087
A9CEI2 Uncharacterized protein At3g47550.28273e-086

Arabidopsis top hits (Blast detail)Scoree value
AT5G62460.1 zinc finger (C3HC4-type RING finger) family protein13074e-144
AT3G47550.3 zinc finger (C3HC4-type RING finger) family protein9912e-107
AT3G47550.6 zinc finger (C3HC4-type RING finger) family protein9912e-107
AT3G47550.2 zinc finger (C3HC4-type RING finger) family protein8325e-089
AT2G02960.2 zinc finger (C3HC4-type RING finger) family protein7545e-080

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
212  22%
 
181  11%
 
62  22%
 
94  44%

Unigene MembersMember information