RadishBase

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Information for unigene UN16315

FASTA Sequence

Unigene ID: UN16315	Length: 907		SNP
GGAAAGATCCGTGAGAGTTCCGGCGATGGCAGAAGACTTCTCGGTGGTAGTCTTAGCTTCCGATCTAGGCGTCGACGCTCGACCGT TCTTAACGAGAAGCGATGAGATCGATGAGCAAGAGAACTGGCACGACTGTCCTCAATACCTCGGCGACGACGAAGACTTCTCCGAT CTCGATCTCCTCCACTTCTTCACCCTCCAAGGCTCCGATAAGTCCGGTAACCGGATCTTCCGCGTCGTCGGAAAGTACTTTCCTGC TCGTGTGGTGAGTGCAGAGAGGCTGAAGAAGTATATATTCCAGAAGATTAGCAACGAGTGTCCCGAGGGACCTTTCTGCTTGGTTT ACATGCATAGCACGGTTCAAAAGGACGAGAACTCGCCGGGGATTACCATCTTGAGATGGATCTACGAGGATCTTCCTTCCGAGATC AAAGACAGGCTCCAAGTTGTTTACTTTATACACCCTGGTCTTCGTTCGAGACTTGTCATCGCCACTCTCGGTCGCCTTCTTCTAAC CGGAGGACTGTACTGGAAGATTAAGTATGTGAGCAGGTTGCAGTATCTGTGGGAGGAGATAAAGAAAGGGGAGGTGGAAGTTCCTG ATTTTGTGAACAACCATGATAATGTGCTTGAGCATAGACCGTTAACTGACTATGGAATCGAACCGGATCCTTTTCATTTAACCGAG GTTCAGTCTTCTTCGTTCTCACTCAACAGAGAACTCAACCAGTACGAGAATAGATGGGTCTCATAGTGTATTTTCTCCTCTTCTGT AATGCCAGAACCTCTTATGTTTTATGTTTCTTGTATAGAGTATAATTGAGTGTCCTAAAAAAACTCTTCAGTTTCAATGTGGTTTT GATTGAGTTTGGGCAGAACCAGTAACTAATGATTGTCGTTGGTAAGT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002884783 hypothetical protein ARALYDRAFT_897197 [Arabidopsis lyrata subsp. lyrata]	1145	4e-123
NP_566369 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Arabidopsis thaliana]	1134	7e-122
AAM65664 unknown [Arabidopsis thaliana]	1127	4e-121
XP_002531499 conserved hypothetical protein [Ricinus communis]	988	6e-105
XP_002307993 predicted protein [Populus trichocarpa]	984	2e-104

Swiss-Prot top hits	Score	e value
No hits found

TrEMBL top hits (Blast detail)	Score	e value
Q9SS33 AT3g10210/F14P13_19	1134	5e-122
Q8L9Z9 Putative uncharacterized protein	1127	3e-121
B9SZT0 Putative uncharacterized protein	988	4e-105
B9H963 Predicted protein	984	1e-104
A9PCA7 Putative uncharacterized protein	978	6e-104

Arabidopsis top hits (Blast detail)	Score	e value
AT3G10210.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cellular retinaldehyde-binding/triple function, C-terminal (InterPro:IPR001251); BEST Arabidopsis thaliana protein match is: Rho-GTPase-activating protein-related (TAIR:AT4G35750.1); Has 305 Blast hits to 305 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 230; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).	1139	7e-125
AT4G35750.1 Rho-GTPase-activating protein-related	481	1e-048
AT1G69340.1 appr-1-p processing enzyme family protein	148	6e-010

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	3			30%


10	1			10%


12	4			40%


6	2			20%

Unigene Members	Member information