 |
Information for unigene UN16378
| FASTA Sequence |
| Unigene ID: UN16378 | Length: 2104 |
| SNP | GGGAACCAGTGAGAAGAAAAAAGATGATGGACGCAACGTCTGAATCAGAAAGAACAAGCCTGGACCTATCAATCTCATCACCAAAA
CAAGCTTACTACGTTGAGAGCCCATCAAGTGTGTCCCAAGTATACGATGGTGACAAATCCTCTTCCGCTGCTTCACTCATTCAGGT
TCAGACCCCAAACTACACCATCCTCACAGAGTCACGTCTCTCTTCTTCAAGCCGCACCTCCAATGGGACAAGCGGTGTGGGGTTCC
GGTGGAAAGGGAGCTCCAGGAGGAGAGACATGTATTGGCTGGAGAGGCATTACACGATTGACGAAGAGGAAGTGTATGAAGACAAC
AGAGGATTGTCGGTTGGACAATGCAGAGCGGTTATGGTAATACTGGGGATTGTGGTTGTGTTCTCTGTTTTCTGCTCTGTTTTGTG
GGGAGCTTCTCATCCTTTCTCTCCTATTGTCTCTGTCAAGAGCTTTAGCCTCCATAGCTTTTACTACGGAGAGGGGATAGACAGAA
CAGGTGTTGCGACCAAGATTCTGAGCTTTAACAGCTCTGTGAAAGTGACAATAGACAGTCCTGCTCCTTACTTTGGCATCCATGTC
TCTTCTTCTTCTACCTTCAATCTCACCTTCTCTACTCTCACTCTCGCCACTGGTCAGCTTAAGAGTTATTACCAACCAAGAAAGAG
CAAGCACACAGCCATTGTGAAGCTTATTGGCTCCGAGGTTCCACTGTACGGAGCAGGACCAAACTTAGCGGCTTCCGACAAGAAGG
GAAGAGTTCCAGTGAAGTTGGAGTTTGAGATCAGATCGCAAGGGAATCTTTTGGGGAAGCTGGTTAAGTCGAAGCACTTGAACCAC
ATCTCCTGCTCTTTCTATATCTCTTCCTCCAAAACCTCAAAACCCTTAGAATTCACTCATAAGACCTGTAAACATATTACCAAGTG
AAACAACACCTTTCTATGTTTCTCCACTTTGCAAATAAGAATTTTTTTTTCTTTTTTGTTTTCTTTTTCCAAGTGTTCAATCTTTT
ATCCTTCACAAGAAAAGGTACATGGATTTCATTTCTATGTGCACCACAAGTGTTTTAAAAGAAGAGATGCTGCTAAATAACAAAAT
GTTCCAAATATGCTCTATTGCTGTATGTCTACAGCACAGCCACCTTCTAGCACTGTTCCGCTTACTCTGTTTGGTGGCCAATACCG
AAAAACTGACCGTCCTATAATATTCTTCAAAGGCAGAGGTCCCCACACGTGCGAATCATAACTGTTGTTCCGGTTGTCACCCATCA
CAAAGACTGAGTTCTCAGGTACCCGAACAGGTGTCATTTCATAACCAGGAGGCTCTAAGATGAAACTTTCATTCCGAGGAACACCG
TTAACCATCAGTTTCCCATTATGAACCTCCACAAGGTCGCCTTCTTTGGCAACAATCCGTTTAATGAAAACATCAGCATCAGTGTA
GCCAACTTCCTGAAGAACCGGTGGACTTTTGAATATTACAATGTCGTTTGCACAAGGCTTCCTGAAATAATAACTCACCTTCTCTG
CAACTAATCTGTCTCCGACATCAAAAGTAGGATACATGGACAAGGAAGGAATGTATCTTGGTTCTGCAATAAAATATCGAAACGCC
AAAGACACAGTGATAGCCAAGAACACAGTCTTGGCATCGTCCGAAGTGAAATCCAGCCATTCCGGAAACAGTCTGTTTTTCTCCAC
CTCCACTTCACTGCCTTCCGGTTCATCACCGTTGTCTCCGCCGTCGCCTCCTTCGCCGTTACCGCCGCCGGAGTCTAACGGCGGGG
CGGATTTCGCTGTCTCGCTAGAATCTTTGAGTCCGTGGCAGCCCAGATTCCGACGGTTTGAATGTGTTGCTTTGAAAGTGAGAGGA
GGGAGGGGAACGGATTGAGATTGGTTGGTGAAGTTGAGACGAGGAATTGGATTATTATTAGAGTTTTTGAAAAATCTGGAATTGGA
ATTGGAATGGGATGTGAGAAGAGAGAGGGAGGGAGTGGGGAAGTGAAGAGATATCATCCTCATCAACGAGTTATTTCTCTGATTTC
TTTCTTTTTGATTCTTGTGTGCTTGCTATGAGGTTACTTC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| BAB02012 unnamed protein product [Arabidopsis thaliana] | 1390 | 4e-151 |
| BAB02011 unnamed protein product [Arabidopsis thaliana] | 1204 | 2e-129 |
| XP_002885659 hypothetical protein ARALYDRAFT_319165 [Arabidopsis lyrata subsp. lyrata] | 1189 | 9e-128 |
| XP_002883537 signal peptidase I family protein [Arabidopsis lyrata subsp. lyrata] | 1181 | 8e-127 |
| NP_189103 Late embryogenesis abundant protein, group 2 [Arabidopsis thaliana] | 1178 | 2e-126 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8H0W1 Chloroplast processing peptidase | 1195 | 8e-130 |
| Q9M9Z2 Probable thylakoidal processing peptidase 2, chloroplastic | 610 | 5e-062 |
| O04348 Thylakoidal processing peptidase 1, chloroplastic | 609 | 7e-062 |
| P72660 Probable signal peptidase I-1 | 473 | 4e-046 |
| Q51876 Signal peptidase I | 436 | 8e-042 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LV43 Genomic DNA, chromosome 3, P1 clone: MOB24 | 1390 | 3e-151 |
| B9RKP7 Signal peptidase I, putative | 991 | 6e-105 |
| C5XZL7 Putative uncharacterized protein Sb04g009960 | 884 | 1e-092 |
| B9ILN3 Predicted protein (Fragment) | 877 | 9e-092 |
| B9N7B8 Predicted protein | 855 | 3e-089 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G24590.1 PLSP1 (plastidic type I signal peptidase 1); peptidase | 1195 | 7e-131 |
| AT3G24600.1 INVOLVED IN: antigen processing and presentation; LOCATED IN: MHC class I protein complex, membrane; CONTAINS InterPro DOMAIN/s: MHC class I, alpha chain, C-terminal (InterPro:IPR010579), Harpin-induced 1 (InterPro:IPR010847); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G35170.1); Has 181 Blast hits to 96 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 181; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 1179 | 5e-129 |
| AT1G06870.1 signal peptidase, putative | 610 | 4e-063 |
| AT2G30440.1 chloroplast thylakoidal processing peptidase | 609 | 6e-063 |
| AT1G45688.1 unknown protein | 331 | 1e-030 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
