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Information for unigene UN16409

FASTA Sequence
Unigene ID: UN16409Length: 697 SSR 
GAGATAATATACTGACTTAATGCAACTAATTAAAAACAAACCATAATGTCACAACAGAAATTTAACCGTACGTTATAACAAAAACC
ATCTAAAAAATTGTCTGAATAAACGATACTTCAGTTTTTAAACAGGAGAGACAAAAAAAACATAACACCTAGTAATCTCTCTCTCT
CATTGATCACTCTTCATCAGGCTTCTTGAAGACATAAGTGGTTCCACACTTGCCACAGTAATGCCTATCGAAATGACTCGCCATGA
ACGTCCCCGGACCACAGCTCGCCGAAGGACACTCTTTCCTCAGCCTCTGAACCTTGCCGCTTCCATCGACCTTGTAAAACTGCAGA
ACCGCGAGCTTCACTTTCTTGTGCTTGTGCTTGATCTTCTTCGGCTTCGTGTACGTCTTCTTCTTCCTCTTCTTCGCTCCTCCTCT
CAGACGGAGAACCAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAATCCGCGAGGGTCCTTCCGTCTTCCAGCTGCTTCCCGGCGA
AGATCAGTCGCTGCTGGTCCGGTGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCTATCGTGTCGGATGATTCGACC
TCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAAGATTTGCATTTTCTTGTGAGTGCTCTCTCTGTTTTTTTTTTTTTTTTT
TGGGTCGCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002890580 hypothetical protein ARALYDRAFT_472603 [Arabidopsis lyrata subsp. lyrata]8073e-084
NP_173755 40S ribosomal protein S27a-1 [Arabidopsis thaliana]7984e-083
NP_191784 ubiquitin-40S ribosomal protein S27a-3 [Arabidopsis thaliana]7698e-080
NP_566095 ubiquitin-40S ribosomal protein S27a-2 [Arabidopsis thaliana]7698e-080
XP_002876668 hypothetical protein ARALYDRAFT_486730 [Arabidopsis lyrata subsp. lyrata]7681e-079

Swiss-Prot top hits (Blast detail)Scoree value
P59271 40S ribosomal protein S27a-14192e-040
P59232 40S ribosomal protein S27a-23904e-037
P59233 40S ribosomal protein S27a-33904e-037
P47905 40S ribosomal protein S27a3805e-036
P59263 Ubiquitin3797e-036

TrEMBL top hits (Blast detail)Scoree value
A0MKC8 Ubiquitin extension protein7671e-079
C6T4R9 Putative uncharacterized protein7581e-078
Q6UCJ3 Ubiquitin extension protein7571e-078
B7FGN8 Putative uncharacterized protein7562e-078
Q06H21 Ubiquitin/ribosomal protein S27a7562e-078

Arabidopsis top hits (Blast detail)Scoree value
AT1G23410.1 ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA)7991e-085
AT2G47110.1 UBQ6; protein binding7694e-082
AT3G62250.1 UBQ5 (ubiquitin 5); protein binding / structural constituent of ribosome7694e-082
AT1G31340.1 RUB1 (RELATED TO UBIQUITIN 1); protein binding3805e-037
AT2G35635.1 UBQ7; protein binding3805e-037

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
63  50%
 
112  33%
 
71  17%

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