RadishBase

| | | |

Information for unigene UN16412

FASTA Sequence

Unigene ID: UN16412	Length: 772		SNP
GGATCTGCGAACCAACCCAACCCTCTCCGAAGATCAAACCAAAAACCCTAGGCTTTGATTGTTTTGTAGCTAAGCACAGGCAGCAG AGAGGACTAATCTCACGCTATGGCTTCGAGAAGAATTAACAAGGAGCTTAGGGACCTGCAAAAGGACCCTCCTGTGTCTTGCAGCG CCGGTCCTGTGGGTGATGATATGTACCACTGGCAAGCAACTATTATGGGTCCCACTGATAGCCCATTCGCCGGAGGTGTCTTTCTT GTTTCCATTCACTTCCCTCCAGATTACCCCTTCAAGCCACCTAAGGTTTCTTTCCGCACCAAGGTTTATCACCCGAATGTCAACAG TAATGGAAGCATCTGTCTTGACATTCTGAAAGAGCAATGGAGCCCTGCACTTACCCTATCCAAGGTTCTTCTGTCGATATGCTCAT TGCTGACAGATCCAAACCCTGATGATCCTCTGGTTCCTGAAATAGCTAACATCTACAAGACAGACCGTACCAAGTACGAGAACACT GCCCGATCCTGGACCCAGAAGTATGCAATGGGATGATGATGGTTGGCACTAATGATTCGCACCAGTAAATTGCGCATTCGTTCTAA GAATTGGAGAAATAAAAAAAAACATGAATTTGGCTTTAGCTTGGTTGCTTGATTTAATTATCTTATTATTAAGCCATGTTTTGGTT GTGTACATGAGCTTCTATTAAAACCTTATTGAAACGTTTGATATTTGCAATGCTTTTAAGCAAGTAGTTGGCTATTATAATGAC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002274367 PREDICTED: hypothetical protein isoform 2 [Vitis vinifera]	759	2e-078
XP_002864437 hypothetical protein ARALYDRAFT_495701 [Arabidopsis lyrata subsp. lyrata]	758	2e-078
XP_002299074 predicted protein [Populus trichocarpa]	750	2e-077
NP_568835 ubiquitin-conjugating enzyme E2 30 [Arabidopsis thaliana]	747	4e-077
XP_002330576 predicted protein [Populus trichocarpa]	745	6e-077

Swiss-Prot top hits (Blast detail)	Score	e value
Q9FKT3 Ubiquitin-conjugating enzyme E2 30	747	2e-078
P35135 Ubiquitin-conjugating enzyme E2-17 kDa	738	2e-077
Q94F47 Ubiquitin-conjugating enzyme E2 28	730	2e-076
P35134 Ubiquitin-conjugating enzyme E2 11	729	2e-076
P35133 Ubiquitin-conjugating enzyme E2 10	725	6e-076

TrEMBL top hits (Blast detail)	Score	e value
A5AI12 Ubiquitin carrier protein	759	1e-078
B9GHJ6 Ubiquitin carrier protein	750	1e-077
B9N5K7 Ubiquitin carrier protein	745	4e-077
A2XYQ9 Ubiquitin carrier protein	744	6e-077
B6SZE0 Ubiquitin carrier protein	744	6e-077

Arabidopsis top hits (Blast detail)	Score	e value
AT5G56150.1 UBC30 (ubiquitin-conjugating enzyme 30); ubiquitin-protein ligase	748	1e-079
AT5G56150.2 UBC30 (ubiquitin-conjugating enzyme 30); ubiquitin-protein ligase	748	1e-079
AT1G64230.1 ubiquitin-conjugating enzyme, putative	731	1e-077
AT1G64230.2 ubiquitin-conjugating enzyme, putative	731	1e-077
AT3G08690.1 UBC11 (UBIQUITIN-CONJUGATING ENZYME 11); ubiquitin-protein ligase	730	1e-077

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


9	2			22%


8	4			44%


6	3			33%

Unigene Members	Member information