RadishBase

| | | |

Information for unigene UN16460

FASTA Sequence

Unigene ID: UN16460	Length: 1380	SSR
ATAAAAGTAAATGAAAACAAACATCCGCGCAACCTCGAGATCTAGTCATTTGTTAATTGAGCTACATTGACTTTTAAATGAAAATC AAAAACATCACAAATTTGAGTAATAAAACACAAATGTAACTGAAATAGGTCATACGAAAAGTCTGTCAACATCTTCGAGACACCAA CACAAGACAAATCATTCAAAGACAATTATGATCTTAGAGCTTCTTTTGACACACGCTCAAAGGAAAACATCTTTTTCGAGCAGCTT CACCACCTCGATCTGGTTGTTGAGCTTAGCCACATCAATGGGTGTCTTCTCGTCTAGGTTTTGCAGAGTCACTGCTGCACCATTCT CAAGGAGAAGGTTAACACACTCTTTCCTCCCGTAACCAGCAGCGTAATGCAGAGGTGTATTCTTGTTTTTGTCAACAGCGTTAACA CTTGCTCCAGCATCGATAAGAACTTGAGCACATTTCAACTCGCCGTATCCACACGCAAAATGCAGTGCTGTCCTTCCTTCAGAATC TTCTTCATCTTTGTTACCACCAGATTCCAAAGCGGTTTTCAAACCCTCAACATCACCAAGACTGGCCGTTTGATGAACAATAGACT CTTCTTCTTCTTGTTCAGCCACTCGGGTTCAGCTGAAGGAGTCTGGTCAGGCAAGCCAGCAACAGGCATACCCATTGCTTCACCAA GCTTTTTCAGCACATCTTTATCATTCCAGTACTTCATCATGGCAGAAGGACCACCAGCATCAATCTCATCAAGTATAGGTTTCAAC TCTGGATCTTCTTTCAACCGTGCCATACGCTCAGTAAAGTTCTCAGCTGTTTCAGGGTTCGAGAAAGCATCCAAGAAAGGAGACAT TTGTGGATCCTTGACTAAGGCGTTACCAAGTCGTTCAGCCATGGTCTGAAACTCGGGGTTATGCATAACTTGTTGCATTGTGCTGA CATACTGTTGTGGATCAATGTTAGGGAAACCCCCTCCTCCTGCTCCTCCCTCAGCTGCGTTTGGGATAGATCTCTGAAGCTGCTCA GCCAACTGGTTAAAGGCAGGATCTTTAGCAATCTGCTCCGCCAATTCTCTGATGCTTGGATCGTTGAGGATACTAGCCATGTTTGA GAAATCAAAAGCATTGAAATTCAAGCCAGGAGGATTAGCTGAACTCCCAGATGCTGGAGGATTAGGTGATGAAGGTGAACTCCCAG ATGCTGCTGCTGCTGCTGATTCCGGTTTAGGACTCTTGCTCTCCTCCTTCGATTCGGTTTTCTCATCTGAAGGAATCAGCGGATTT TTCTCTGGATTCGAAGCCATTAGATCAAACTTAAACCCTAGAAGAAGAAGAAAAACACAATAGATTATTCAGAAACAAAGATTTAG ACCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
BAJ33771 unnamed protein product [Thellungiella halophila]	858	1e-089
AAC33264 AFT protein [Arabidopsis thaliana]	827	5e-086
NP_195270 ankyrin repeat domain-containing protein 2 [Arabidopsis thaliana]	826	7e-086
AAD10949 ankyrin repeat-containing protein 2 [Arabidopsis thaliana]	826	7e-086
NP_849499 ankyrin repeat domain-containing protein 2 [Arabidopsis thaliana]	793	4e-082

Swiss-Prot top hits (Blast detail)	Score	e value
Q9SAR5 Ankyrin repeat domain-containing protein 2	827	2e-087
Q9XZC0 Alpha-latrocrustotoxin-Lt1a (Fragment)	199	1e-014
Q9STP8 Acyl-CoA-binding domain-containing protein 2	194	5e-014
Q54KA7 Ankyrin repeat, PH and SEC7 domain containing protein secG	192	9e-014
O95271 Tankyrase-1	190	2e-013

TrEMBL top hits (Blast detail)	Score	e value
B9DFM6 AT4G35450 protein	826	4e-086
Q3E9Q8 Putative uncharacterized protein At4g35450.4	793	3e-082
Q29Q26 At2g17390	588	2e-058
C6TLC2 Putative uncharacterized protein	549	6e-054
Q9AT16 Ankyrin-repeat protein HBP1	549	6e-054

Arabidopsis top hits (Blast detail)	Score	e value
AT4G35450.3 AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2); protein binding	827	2e-088
AT4G35450.2 AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2); protein binding	827	2e-088
AT4G35450.1 AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2); protein binding	827	2e-088
AT4G35450.4 AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2); protein binding	810	2e-086
AT2G17390.1 AKR2B (ANKYRIN REPEAT-CONTAINING 2B); protein binding / transcription regulator	744	8e-079

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	1			14%


8	4			57%


10	1			14%


9	1			14%

Unigene Members	Member information