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Information for unigene UN16534
| FASTA Sequence |
| Unigene ID: UN16534 | Length: 756 |
SSR | | GGACTATCACATTGTCTCTTCTCTCCTCCCAATCACACTACACTACACATCATGGCTTTCGCCACTAGAAGCTCTCTCTTCGTCTG
CTTCACAACACTTGTTCTTCTCTCCACTCAAATCAATGCAAGAGAGAGCTACTTCTTTGGAAAATTCCACCGAGAATCCCCCAAAG
ACCAAAACACTAACAATGTCCTCCCTCTCGAGACTAGCGAGAAAACCACAGTAGAAGAATCTTTTCCCAACAAGAAAGAGCAAGAG
CAAGATCCTACCTTTGTCCCTGAGTCCGAAAACGGCTATGGCTTATATGGTCATGAGACCACCTACAACAACAAGAAAGAAGAGTT
CAACAACAACAACAACAAGTACGATGAAAAATTCAACGGTGAGACTTTCTCAACTCCAAGCTTGAGCGAGACCGAAGAGCCTTACA
ACAACTACGAGGAGAACTACCCGAAGAAGACCGAGAGCTACGACAACAACCGTTACAACAACGAAGAGTTCAACAACAAGTACGAT
GAAAACGTCAAGGAAGAGTTCAACAACAACAACAAGTACGATGAAAACTTCAAGGAAGAGTTCAACAACAACAAGTACGATGAAAA
CTTCAAGGAAGGGTCATTCTCTGAGAACAATGAAGACAAGAGAGGTATCTACAACTCCCACGCTTACGGAACGGAGCTAGAGCGTG
AAACGCCTTACAAAGGTTACAGCCACAACTTGGAGAGACAAGGCATGAGCGACACAAAGGTTCATGGA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002893529 hypothetical protein ARALYDRAFT_473059 [Arabidopsis lyrata subsp. lyrata] | 946 | 3e-100 |
| NP_174162 uncharacterized protein [Arabidopsis thaliana] | 742 | 1e-076 |
| XP_002064277 GK19787 [Drosophila willistoni] | 232 | 2e-017 |
| EGD79530 hypothetical protein PTSG_12992 [Salpingoeca sp. ATCC 50818] | 226 | 9e-017 |
| XP_628559 cryptopsoridial mucin, large thr stretch, signal peptide sequence [Cryptosporidium parvum Iowa II] | 221 | 4e-016 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q6S6W0 Glycoprotein gp2 | 187 | 1e-013 |
| P47179 Cell wall protein DAN4 | 180 | 9e-013 |
| Q05049 Integumentary mucin C.1 (Fragment) | 170 | 1e-011 |
| Q54VM3 TBC1 domain family member 5 homolog A | 162 | 1e-010 |
| Q12140 Bypass of stop codon protein 1 | 159 | 3e-010 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9SGN8 F3M18.16 | 742 | 9e-077 |
| B4MT24 GK19787 | 232 | 1e-017 |
| Q5CY21 Cryptopsoridial mucin, large thr stretch, signal peptide sequence | 221 | 2e-016 |
| O96503 GP900 | 217 | 7e-016 |
| Q5CEX1 Putative uncharacterized protein | 213 | 2e-015 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G28400.1 unknown protein | 950 | 4e-103 |
| AT2G33850.1 unknown protein | 422 | 7e-042 |
| AT5G01280.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, male gametophyte; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 40332 Blast hits to 19265 proteins in 905 species: Archae - 97; Bacteria - 3595; Metazoa - 17370; Fungi - 8276; Plants - 837; Viruses - 1209; Other Eukaryotes - 8948 (source: NCBI BLink). | 128 | 9e-008 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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