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Information for unigene UN16541
FASTA Sequence |
Unigene ID: UN16541 | Length: 1473 |
SSR | SNP | GGGCAAAATTGGCCGCTTCTGAGTTTAGAACCCAAAAAGGATAATATAAAAAGGGATTTAAACCTAAAGCCCCGAGAAACAAACCA
AAACGGGGCCGCCTGAAAGAGAGCAATAATGGCGAAAGGCGACGATGCTTTGGCGAGGAAGAAGAACAAATCCAACCGGAAGAAGA
TGAATCGCAAGAACGATTCCGCCGCCGTATCCTCTCGCATCGCCGCTATCATCGCCGCCAAGAAGCGCCGCCAGACTGGCAAACGC
AGCATGTGTCAGGGAATGTGTTTTAGCCTTCCTACACCAGAAGATCCCTTCAATGAGAAGCTGGGTAAAGTGAGCATTGTCAAAGA
GAAGAAGAAGAAGAAAAAGGTCAAGTCTAGAGATGCTCTTTCAGTGAATAAATCTTCTCTTAAGAAACCATCTCGAGACGGCGATG
AGAAGAAGACGGAGAAGATGAGGGTGATTCATGGTCCACGTAAGTTGGTGATGCTCTGCCTGACCGAAATCGAGAGCTCCTTTCAT
CACCTTGAGAAGCCTTTGTTCACTAGCACTTGGGGGAATGAGTTCTGGAAATCTTTTCATTCTGGTAAAGATGTTGTTGAGACTAG
TGTGACATCTTCCTCCCTTGAACAAATCGCATGGATCGTTTCGACTGCCACTGATGCTATTTCTATGCGAGAGAAATACGAGGAGA
GCCTACCACTAAGCAGTAGTCCTTTTCTCTTATATCTCGTACCATCTCAGTCCAAAGCTTCAGAGGTTCGATCGGTTTGCAAGGCG
CTGAAACGTCTTGGAGTTCATGCAGTGAGCTTACACAATGGAGCCGAAATAGATCATCAGATTTCTGGATTGAAAAGCTTAGAACC
TGAATTTATAGTTTCCACACCTGAGCGACTTTTGGAGATTGTTGCCCTCAAAGGAGTTGATATATCGGGGGTTTCGTTACTGGTCA
TTGATGAACTAGGTTCACTTTGCGCTAGTGGTTATCTAGATGCGGTGAAATCCATTAAGAAGGCCATCACCAGCGAGCACCGATCA
GTAGTTTTCAACGACAGTGCTTCCTGTACTCCAGCCGTCCTGAGTCTTTTGGGGAGATTCTGACAAGTATTGCTAAAGAGAGTGTT
TACGGTGTGCTACACAGCTTTGTAACAGAAAAAGAGGAGGATGTGTTTTGTCTTGCTGGTTCATTGGTGAATGTTCTGGAGGATTG
TGGCCAGGACGTGCCTGGCTGTTGGAGGAATATGTCTAATTGATCAAACTTGTTGTTTCTCAATACTCTTTTAAGTTACAATTTTA
GTTTTTGCTTACTGAAAGTTTTAGCTGCAGGGAATTTTGGTTAAAGTGATATAAATTTTGAGTAATTGATGTTTCTTTTTTTCCTT
CTGATCATTTTCTTGTCCGGTCCAATGATATGTTTAAAGTTGTTTGATTTTGAGTTCGCATCAAGTTCAATAAGAGACACTCGAGT
CTTAATCAGCC
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GenBank top hits (Blast detail) | Score | e value |
XP_002879168 ATP binding protein [Arabidopsis lyrata subsp. lyrata] | 1070 | 4e-114 |
AAM13871 putative ATP-dependent RNA helicase [Arabidopsis thaliana] | 1001 | 4e-106 |
NP_180427 P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] | 997 | 1e-105 |
XP_002268889 PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] | 856 | 2e-089 |
XP_002530895 dead box ATP-dependent RNA helicase, putative [Ricinus communis] | 782 | 9e-081 |
Swiss-Prot top hits | Score | e value |
No hits found | | |
TrEMBL top hits (Blast detail) | Score | e value |
Q8RWX0 Putative ATP-dependent RNA helicase (Fragment) | 1048 | 9e-112 |
Q9SIB5 Putative ATP-dependent RNA helicase | 1018 | 3e-108 |
B9SY26 Dead box ATP-dependent RNA helicase, putative | 782 | 6e-081 |
B9HUY8 Predicted protein | 748 | 5e-077 |
Q2QXQ5 ATP-dependent RNA helicase, putative, expressed | 466 | 3e-044 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT2G28600.1 ATP binding / ATP-dependent helicase/ nucleic acid binding | 1018 | 1e-110 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
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