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Information for unigene UN16560

FASTA Sequence
Unigene ID: UN16560Length: 642 SSR 
TTTTAGAACTAAAGTGAGGGACAAGACTGTATACTAAAAGCATAACTTATACTACATAGAATAATAGAACTAAAGTGACATGTTTG
TCAACATAAATACCAAAATAAATAAGTTTGCAACATTTAAGTACCCAAAAGCATTAAAACCATAACAGAGAGAGTTCATCATATTT
AAGCTGAGAGTTTGATCTTCTTGGCTGCTGGCTCATCTTCTGAAACATGAACCTCAGATTCTTCTTCCTCCTCCTCTTCTTCGTCT
TCTTCCTCTTCCTCTTCTTCTTCTTCTTGATCTTCTTCTTCTTCAGCGGAATTTTCAGACTTTACTTCATCTTCTCGCTCCTCCAG
CTCTTTCTTCTTCTTCACCTCCTCTATCACATCCATCAATTCCCTATTCACCTGTGGGTTCTGAAGGAAGTCAGAAATGTCATTTG
GGCAGCAAGGACACTTCATGACGTTCTTCTGTGCACGTAGAGTGCGCCCACCTCTGCTTCTCTGCCTCACTTGAGTTATCCCAGCA
AATTTACCAGTTAGGCATTCCTTGCAGAAGTTGTGAGCGCAAGGCGTTGTCACTGGAGAGCTCATGACTTCCCGACAGATTTGGCA
ACCAAATTCTTTGAGAAATTTGTCCCTATTGTTTCCTGCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002887003 predicted protein [Arabidopsis lyrata subsp. lyrata]4481e-042
XP_002886735 hypothetical protein ARALYDRAFT_315436 [Arabidopsis lyrata subsp. lyrata]4292e-040
XP_002888476 predicted protein [Arabidopsis lyrata subsp. lyrata]4255e-040
NP_198771 E3 ubiquitin-protein ligase ORTHRUS 1 [Arabidopsis thaliana]4069e-038
BAD44541 zinc finger-like protein [Arabidopsis thaliana]4069e-038

Swiss-Prot top hits (Blast detail)Scoree value
Q54F38 Histone H3.v11682e-011
Q9EPQ2 X-linked retinitis pigmentosa GTPase regulator-interacting protein 11682e-011
Q7M732 Retrotransposon-like protein 11645e-011
P13816 Glutamic acid-rich protein1601e-010
Q8WML3 Histone acetyltransferase MYST41582e-010

TrEMBL top hits (Blast detail)Scoree value
B9GZ20 Predicted protein4066e-038
Q67XP0 Zinc finger-like protein4066e-038
Q9FKA7 At5g395504066e-038
Q9FVS2 Putative uncharacterized protein F12K22.154058e-038
B9SU90 Zinc finger protein, putative4022e-037

Arabidopsis top hits (Blast detail)Scoree value
AT5G39550.1 VIM3 (VARIANT IN METHYLATION 3); methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding / protein binding / ubiquitin-protein ligase/ zinc ion binding4064e-040
AT1G57800.1 VIM5 (VARIANT IN METHYLATION 5); protein binding / zinc ion binding4055e-040
AT1G66040.1 VIM4 (VARIANT IN METHYLATION 4); protein binding / zinc ion binding4021e-039
AT1G66050.1 VIM2 (VARIANT IN METHYLATION 2); protein binding / ubiquitin-protein ligase/ zinc ion binding4021e-039
AT1G57820.1 VIM1 (VARIANT IN METHYLATION 1); DNA binding / chromatin binding / double-stranded methylated DNA binding / histone binding / methyl-CpG binding / methyl-CpNpG binding / methyl-CpNpN binding / ubiquitin-protein ligase3975e-039

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
101  50%
 
111  50%

Unigene MembersMember information