RadishBase

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Information for unigene UN16617

FASTA Sequence

Unigene ID: UN16617	Length: 735	SSR
GGGGTGTTGAGTTCCGTCAATTGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACAGGTTGGAAGTTGGTTGTCTGCGTTATTTA TCTACCACCTAAACTATGTTTTTCGATGGATACCATTACCCTGGAACCACCTTTGAGCAGAGTTACCGGTGCTATCCTGCATCTTT TATCGACAAGCCTCAAATTGAAAGTGGTGACAAGATTATAATGCCACCATCAGCTCTTGACCGTCTCGCCTCTTTGCATATTGACT ATCCTATGCTGTTTGAGCTTCGTAATGCTGGAATCGAACGTGTTTCACACTGTGGAGTCCTTGAGTTCATTGCTGAAGAAGGCATG ATTTACATGCCATATTGGATGATGCAGAATCTGCTGCTGTAAGAAGGAGACATTGTGAGAGTTAGAAATGTCACTCTTCCAAAAGG AACCTATGTTAAACTACAGCCGCACACTACGGACTTCCTGGATATATCTAATCTGAAAGCCATCTTGGAGACTGCTTTGAGGAACT ACTCATGCCTAACCACTGGGGATAGCATTATGGTTCCATACAACAATAAGAAGTACTTTATATATATATAGTTGAAACAAAGCCTG CTAACGGAATCAGCATCATAGAAACAGACTGTGAGGTTGATTTTGCACCTCCCCTTGATACAGAGCCTGAACGTCCCAAACAGCAC TGCTGCAGCTAAGGTCGCGAAGCTGAGAAGTGTGCTGACTGACAAAG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_001077933 ubiquitin fusion degradation 1 [Arabidopsis thaliana]	820	1e-085
XP_002878541 hypothetical protein ARALYDRAFT_480987 [Arabidopsis lyrata subsp. lyrata]	818	2e-085
AAM64897 putative ubiquitin fusion-degradation protein [Arabidopsis thaliana]	815	4e-085
NP_565504 ubiquitin fusion degradation 1 [Arabidopsis thaliana]	815	4e-085
XP_002866824 ubiquitin fusion degradation UFD1 family protein [Arabidopsis lyrata subsp. lyrata]	759	1e-078

Swiss-Prot top hits (Blast detail)	Score	e value
Q55BK0 Ubiquitin fusion degradation protein 1 homolog	459	4e-045
Q9VTF9 Ubiquitin fusion degradation protein 1 homolog	455	1e-044
Q92890 Ubiquitin fusion degradation protein 1 homolog	454	1e-044
Q9ES53 Ubiquitin fusion degradation protein 1 homolog	454	1e-044
P70362 Ubiquitin fusion degradation protein 1 homolog	452	3e-044

TrEMBL top hits (Blast detail)	Score	e value
A8MQW3 AT2G21270 protein	820	8e-086
Q8LB95 Putative ubiquitin fusion-degradation protein	815	3e-085
Q9SJV0 At2g21270	815	3e-085
B9RG51 Ubiquitin fusion degradaton protein, putative	758	1e-078
Q8W570 AT4g38930/F19H22_30	753	5e-078

Arabidopsis top hits (Blast detail)	Score	e value
AT2G21270.3 ubiquitin fusion degradation UFD1 family protein	820	5e-088
AT2G21270.1 ubiquitin fusion degradation UFD1 family protein	815	2e-087
AT2G21270.2 ubiquitin fusion degradation UFD1 family protein	815	2e-087
AT4G38930.1 ubiquitin fusion degradation UFD1 family protein	753	3e-080
AT4G38930.2 ubiquitin fusion degradation UFD1 family protein	753	3e-080

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	1			50%


8	1			50%

Unigene Members	Member information