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Information for unigene UN16640
| FASTA Sequence |
| Unigene ID: UN16640 | Length: 1177 |
SSR | | GGAATGGCTCTTCTTCGTCTCCCTCCCATTTCCCTCCAATTTCTAGGTCACCAATCTGAACACAAAACCCCTAATCCCGGCGTTTC
GCTCACCAATTTCTCCCTCCCTTGGTCTACTCCTCCTTCACTATCTCGTCTCCATCTATCAAAACCCAGAAATCTTACCTCCTGCT
TCTCCGCTACTACCCAAGAGCCAATCCTCGAGTCTTCTTCTTCTTCTTCTGAAGAGATTTCGAAAACCAGATTGATTGCTCAAAAC
GTTCCTTGGACCTCTACACCCGAAGACATAAGGTCGCTGTTCGAGAAACACGGCAATGTCGTCGACGTTGAGATGTCTATGCACAA
GAAGGAAAGGAACCGAGGTTTGGTTTTCATTGAGATGGCTTCTCCTGAAGATGCTGCATCAGCTCTTCAAGCTCTCGAATCCTATG
AATATGAGGGTCGTCGTTTGAAGGTAGCCTATGCAAAGGCCAAAAAGAAGAAAACTTATGCTCCTCGTGAGAAGCCTACGCCGGTG
CCTACCTTCAATTTGTTTGTTGCAAACTTGGCGTTTGAAGCAAGGGCCAAGCATCTTAAGGAGTTCTTTGATGCAGACACTGGTAA
CGTTGTCTCCACTGAAGTTATATTCCATGAAAATCCTAGGAGGTCGAGTGGTTACGGCTTTGTCTCTTTCAAAACCAAGAAAATGG
CCGATGCTGCGCTCCTTGAGTTCCAAGGAAAGGATTTCATGGGAAGACCAATCCGATTAGCTCGTAGCAAACAGTTTGTGAAGTTG
CAAGCAAAAGAAGGGTTGCAGCCACCTGATGAAGAGGAACTATCTGAGTCTGAGACAATGACCCAAGAGGACGAAATTCCAGCTCC
GGAAAACTGAGAAGGATTAGTGGTGGTTGGGTATCGGAATTGAAGAGAAAGCTTTGAGATTTTGACAAACAAGAGAAGCGGATACA
TTGCAATTACCAACCTTAAGTAAGTGGTGGAGAAGTAAGAAGTACAGGAACGATCTAGTTAGAACTGAAAACTACTAGCGACTGTC
AAGAAACAAAACCCATGTGTCTCTAAGAACTTGCTTTGTTAAGTTAACACAATGTTCTTATTTTTCTATTGGTTTTGATAGAAAAT
TTTGCATTTGTTACTATGTTGAATGTGTATTTATTTGGTTCCCAAAGAGCCCCACTTAC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_192643 RNA recognition motif-containing protein [Arabidopsis thaliana] | 1052 | 3e-112 |
| BAD43393 putative protein [Arabidopsis thaliana] | 1049 | 7e-112 |
| XP_002872360 hypothetical protein ARALYDRAFT_489706 [Arabidopsis lyrata subsp. lyrata] | 1030 | 1e-109 |
| NP_001078360 RNA recognition motif-containing protein [Arabidopsis thaliana] | 957 | 3e-101 |
| CAB78028 putative protein [Arabidopsis thaliana] | 739 | 6e-076 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9ZQA8 Probable polyadenylate-binding protein At2g36660 | 164 | 1e-010 |
| Q9USY2 Uncharacterized RNA-binding protein C1861.04c | 162 | 2e-010 |
| Q8VH51 RNA-binding protein 39 | 146 | 2e-008 |
| Q14498 RNA-binding protein 39 | 143 | 4e-008 |
| Q5RC80 RNA-binding protein 39 | 143 | 4e-008 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q6NPL0 At4g09040 | 1052 | 2e-112 |
| Q681I7 Putative uncharacterized protein At4g09040 | 1049 | 5e-112 |
| A8MS54 Uncharacterized protein At4g09040.2 | 957 | 2e-101 |
| Q9M0S3 Putative uncharacterized protein AT4g09040 | 739 | 4e-076 |
| C6TK63 Putative uncharacterized protein | 687 | 5e-070 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G09040.1 RNA recognition motif (RRM)-containing protein | 1171 | 2e-128 |
| AT4G09040.2 RNA recognition motif (RRM)-containing protein | 957 | 1e-103 |
| AT2G35410.1 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative | 362 | 1e-034 |
| AT1G60000.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 196 | 2e-015 |
| AT2G23350.1 PAB4 (POLY(A) BINDING PROTEIN 4); RNA binding / translation initiation factor | 169 | 3e-012 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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