RadishBase

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Information for unigene UN16666

FASTA Sequence

Unigene ID: UN16666	Length: 946		SNP
GGAACTCACACTCTCTCTTCAATCCTTCTAGTTAAGAAAGACTTGGATCAGAAATGGCCACCTCAGCAATCCAGCAATCCTCCTTC GCTGGCCAAACGGCCCTAAAGCCCTCCAACGATCTCCTCCGCAAGGTCGGTGTCTCCGGCGGCGGCCGCGTGACCATGCGCCGCAC AGTCAAGTCTACTCCTCAAAGCATTTGGTACGGACCAGACCGTCCAAAGTACTTGGGACCGTTCTCCGAGAACACACCGTCCTACC TAACCGGAGAATACCCCGGAGACTACGGCTGGGACACCGCGGGACTTTCCGCTGACCCAGAGACATTCGCTAAGAACCGTGAGCTC GAAGTAATCCACAGCAGATGGGCAATGCTGGGAGCTCTAGGCTGCACGTTCCCCGAGATCCTCTCCAAGAACGGAGTCAAATTCGG AGAAGCCGTGTGGTTCAAGGCAGGATCCCAGATCTTCTCAGAAGGAGGTCTTGACTACCTCGGAAACCCTAACTTGATCCACGCGC AAAGCATCTTAGCCATCTGGGCTTGTCAAGTTGTGCTCATGGGTTTGATCGAAGGGTACAGAATCGGAGGTGGTCCTCTCGGAGAA GGTCTTGACCCGCTTTACCCCGGAGGTGCGTTCGACCCGTTGAATTTGGCAGAGGACCCGGAGGCCTTCGCTGAGCTGAAGGTGAA GGAGCTCAAGAACGGACGTCTTGCCATGTTCTCCATGTTTGGATTCTTTGTTCAAGCAATTGTTACTGGTAAAGGTCCCATCGAGA ACTTGTTTGATCACTTGGCAGATCCTGTGGCTAACAACGCCTGGTCTTTCGCTACCAACTTTGTCCCCGGAAAGTGATTTATCTAT CTTATGGATTTGCTTCACCGTCTTATCTTACTTTGTAAAAGCATCAATGTATTGGTCGTGTTTTATGTGAATTTGGTACTTGGGGT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
AAD28771 Lhcb2 protein [Arabidopsis thaliana]	1385	6e-151
XP_002885789 Lhcb2 protein [Arabidopsis lyrata subsp. lyrata]	1385	6e-151
AAD28769 Lhcb2 protein [Arabidopsis thaliana]	1381	2e-150
NP_178585 photosystem II light harvesting complex protein 2.1 [Arabidopsis thaliana]	1380	2e-150
NP_178582 photosystem II light harvesting complex protein 2.2 [Arabidopsis thaliana]	1372	2e-149

Swiss-Prot top hits (Blast detail)	Score	e value
P27518 Chlorophyll a-b binding protein 151, chloroplastic	1300	2e-142
P27494 Chlorophyll a-b binding protein 36, chloroplastic	1283	2e-140
P12062 Chlorophyll a-b binding protein 37, chloroplastic	1283	2e-140
P12328 Chlorophyll a-b binding protein of LHCII type I, chloroplastic	1251	9e-137
P14278 Chlorophyll a-b binding protein 4, chloroplastic	1250	1e-136

TrEMBL top hits (Blast detail)	Score	e value
Q9XF86 Lhcb2 protein	1385	4e-151
Q9SYW9 Lhcb2 protein	1381	1e-150
Q9SHR7 At2g05100/F15L11.2	1380	1e-150
Q9S7J7 At2g05070/F1O13.20	1372	1e-149
Q9XF87 At3g27700	1361	2e-148

Arabidopsis top hits (Blast detail)	Score	e value
AT2G05100.1 LHCB2.1; chlorophyll binding	1381	6e-153
AT2G05070.1 LHCB2.2; chlorophyll binding	1373	5e-152
AT3G27690.1 LHCB2.3; chlorophyll binding	1362	1e-150
AT2G34420.1 LHB1B2; chlorophyll binding	1075	2e-117
AT1G29910.1 CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3); chlorophyll binding	1069	1e-116

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	2			12%


8	2			12%


19	7			41%


6	2			12%


10	3			18%


11	1			6%

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