RadishBase

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Information for unigene UN16675

FASTA Sequence

Unigene ID: UN16675	Length: 841	SSR
GGGCCGGTATCAAAAAAAAAGGATAATCAAATAAACTAATCATCATCATCATCATCATCATCATCATCCCTTCCGTCTTCAAATGT CTTCTCGCCGGAGAGTTCTTCTTAAGGTTATCATCCTCGGCGATAGCGGGGTTGGGAAGACATCTTTGATGAATCAGTTTGTGAAC CGCAAGTTTAGTAATCAGTACAAAGCTACGATTGGAGCTGATTTCTTGACTAAAGAGGTTCAAATTGATGACCGCATCTTCACTTT ACAGATTTGGGATACTGCTGGACAAGAAAGGTTCCAAAGCTTGGGAGTAGCTTTCTACAGAGGAGCTGACTGTTGTGTTCTTGTGT ACGATGTCAATGTTATGAAATCTTTTGAGAATCTTAATAACTGGAGGGAAGAGTTCTTGATTCAAGCTGGTCCATCCGATCCTGAC AACTTCCCGTTTGTCGTCTTGGGGAACAAGACCGATGTTGATGGTGGCAAAAGCCGAGTGGTTTCTGAGAAGAAAGCAAAGGCGTG GTGTGCGTCTAAAGGAAACATTCCTTACTTTGAGACATCTGCCAAAGAAGGATTCAATGTAGACGCAGCTTTCGAGTGCATCACCA AAAATGCTTTCAAGAATGAACCTGAAGAAGAACCGCACCTACCCGACACGATTGATGTTGCTGGAGGTCAGCAACACAGATCAACA GGGTGTGAATGCTAAATCAACCAAAGAGTTTATTTCAGTTCATTTGAATTATTACAGATTCTAACGAACTATTAGCTCATTTTCTT TTGGGTTCCATACAGTGTTTTCAATCATGTAGTGTGACAAAATATCATTTATGAATGCATTCGAAAT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_175638 RAB GTPase homolog G3D [Arabidopsis thaliana]	1064	8e-114
XP_002882978 hypothetical protein ARALYDRAFT_479064 [Arabidopsis lyrata subsp. lyrata]	1018	2e-108
NP_188231 RAB GTPase-like protein G3C [Arabidopsis thaliana]	1009	2e-107
XP_002516039 protein with unknown function [Ricinus communis]	987	6e-105
XP_002284408 PREDICTED: hypothetical protein [Vitis vinifera]	986	8e-105

Swiss-Prot top hits (Blast detail)	Score	e value
Q9XER8 Ras-related protein Rab7	984	7e-106
O24461 Ras-related protein Rab7	980	2e-105
Q40787 Ras-related protein Rab7	937	2e-100
P31022 Ras-related protein Rab7	912	1e-097
P93267 Ras-related protein Rab7A	911	2e-097

TrEMBL top hits (Blast detail)	Score	e value
Q9C820 AtRab72	1064	5e-114
Q9LW76 At3g16100	1009	1e-107
B9RQM0 Putative uncharacterized protein	987	4e-105
B7FN46 Putative uncharacterized protein	985	8e-105
C6SWS6 Putative uncharacterized protein	981	2e-104

Arabidopsis top hits (Blast detail)	Score	e value
AT1G52280.1 AtRABG3d (Arabidopsis Rab GTPase homolog G3d); GTP binding	1065	2e-116
AT3G16100.1 ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C); GTP binding	1010	6e-110
AT3G18820.1 ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F); GTP binding	919	2e-099
AT1G49300.1 RABG3E (RAB GTPASE HOMOLOG G3E); GTP binding	904	1e-097
AT1G49300.2 RABG3E (RAB GTPASE HOMOLOG G3E); GTP binding	904	1e-097

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	2			67%


9	1			33%

Unigene Members	Member information