 |
Information for unigene UN16692
| FASTA Sequence |
| Unigene ID: UN16692 | Length: 749 |
| SNP | TCAGATAAATTTCATGTATTAGAAAAAAGCCATATGATGCTCATGCATCCAATCAAAATCATATGGTAATAAAGATTACATTACAA
AAAAAAAACTCATAACCTCACATACAACCAACACACAAATTGAGAAAAACTGTAAGGTTTTCTCATTTATTCAATCACAAAAGTTC
ACAACCATATATAATGCATATAAAAAACTACTACAATCAAATCAAGACAAAAGAAACTTCATGATCATCAACTACAATAACATAGC
AAATATATAATCATTGAAATGACTATATATTATAAAGATAGGGCTTTAATTATTTTTTTTATTAGCAATAAGCGACACACTTCTTC
TTACAATCCATGGTACATCCACCACCTCCGCCTCCACCGCCGTATCCTTTCCCGGAGCGGCTAAAAGAGCTGAAACACCTGGCAGG
ACACCTCAGCTTCTTGCCGTTACAAGGTCCTTTCTCTTTGCAAGTCACCGTCGGCCTCACCACGCCTCCTTTCCCGTACCCGCCGC
TCGGACCACCGTAGCCTCCGCCGTATCCACCGCCGACTCCAGTACCGGGAAACCCGTTTCCAAACCCGGGTATCCCGGCATATCCG
GATCCGGGCACACCGGCGAATCCTAAACCATTGTTACCGCTCTTCTGACGAGCTGAGTGAGTTGCAGAGACGAAGATGATGAGGAG
AAGGGAAGCTACAAGGATCGGTTTTGTTGTAAACATTTTTGTTTTTGGTTAAGTGGGTTCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_193893 glycine-rich protein [Arabidopsis thaliana] | 652 | 4e-066 |
| XP_002869876 hypothetical protein ARALYDRAFT_914508 [Arabidopsis lyrata subsp. lyrata] | 649 | 8e-066 |
| XP_002521418 nucleic acid binding protein, putative [Ricinus communis] | 447 | 2e-042 |
| AEJ08194 glycine-rich protein [Medicago truncatula] | 443 | 6e-042 |
| ACU13385 unknown [Glycine max] | 438 | 2e-041 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P27484 Glycine-rich protein 2 | 153 | 1e-009 |
| O70133 ATP-dependent RNA helicase A | 134 | 2e-007 |
| P10495 Glycine-rich cell wall structural protein 1.0 | 129 | 8e-007 |
| A4QSS5 ATP-dependent RNA helicase DBP2 | 125 | 2e-006 |
| Q5KFM6 ATP-dependent RNA helicase DBP2-A | 124 | 3e-006 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9SVT5 AT4g21620/F17L22_80 | 652 | 3e-066 |
| B9S5Z9 Nucleic acid binding protein, putative | 447 | 2e-042 |
| C6SVW2 Putative uncharacterized protein | 438 | 2e-041 |
| C6TKQ7 Putative uncharacterized protein | 436 | 3e-041 |
| B9HYY5 Predicted protein | 417 | 5e-039 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G21620.1 glycine-rich protein | 653 | 1e-068 |
| AT1G61255.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G21620.1); Has 45 Blast hits to 45 proteins in 7 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 269 | 4e-024 |
| AT2G19000.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT4G21620.1); Has 49 Blast hits to 49 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 175 | 3e-013 |
| AT2G36120.1 DOT1 (DEFECTIVELY ORGANIZED TRIBUTARIES 1) | 135 | 1e-008 |
| AT3G23450.1 unknown protein | 131 | 4e-008 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
