Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN16747

FASTA Sequence
Unigene ID: UN16747Length: 830 SSR 
CATATGTGGAAATGAATTAAAATACCTTTTCCTCTTTCGCTAAACAGAGGGAGGGAGGCACTTTCTTCGCCGGTAACAGAAAAAAA
TAATCATATAAACTAATCATCATCATCATCATCATCATCATCATCATCATCATCATCCCTTCCGTCTTCAAATGTCTTCTCGCCGG
AGAGTTCTTCTTAAGGTTATCATCCTCGGCGATAGCGGGGTTGGGAAGACATCTTTGATGAATCAGTTTGTGAACCGCAAGTTTAG
TAATCAGTACAAAGCTACGATTGGAGCTGATTTCTTGACTAAAGAGGTTCAAATTGATGACCGCATCTTCACTTTACAGATTTGGG
ATACTGCTGGACAAGAAAGGTTCCAAAGCTTGGGAGTTGCGTTCTACAGAGGAGCTGACTGTTGTGTTCTTGTGTACGATGTCAAT
GTTATGAAATCCTTTCGAGAATCTTAATAACTGGAGGGAAGAGTTCTTGATTCAGGCTGGTCCATCCGATCCTGACAACTTTCCGT
TTGTCGTCTTGGGGAACAAGACCGATGTTGATGGTGGCAAAAGCCGAGTGGTTTCTGAGAAGAAAGCAAAGGCGTGGTGTGCGTCT
AAAGGAAACATTCCTTACTTTGAGACATCTGCCAAAGAAGGATTCAGTGTAGACGCAGCTTTCGAGTGCATCACCAAAAGTGCTTT
CAAGAATGAACCTGAAGAAACCGTACCTACCCGACACGATTGATGTTGCTGGAGTCAGCAACACAGATCAACAGGTGTGAATGCTA
ATCAAGCAAAAGTTCTTTCAGTTCATTTGAATGTTACAGAGATCTACGACTATAGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_175638 RAB GTPase homolog G3D [Arabidopsis thaliana]4894e-047
NP_188231 RAB GTPase-like protein G3C [Arabidopsis thaliana]4779e-046
XP_002882978 hypothetical protein ARALYDRAFT_479064 [Arabidopsis lyrata subsp. lyrata]4779e-046
O24461 RecName: Full=Ras-related protein Rab74706e-045
CAA98171 RAB7D [Lotus japonicus]4706e-045

Swiss-Prot top hits (Blast detail)Scoree value
O24461 Ras-related protein Rab74703e-046
Q9XER8 Ras-related protein Rab74693e-046
Q40787 Ras-related protein Rab74604e-045
P93267 Ras-related protein Rab7A4595e-045
P31022 Ras-related protein Rab74542e-044

TrEMBL top hits (Blast detail)Scoree value
Q9C820 AtRab724892e-047
Q9LW76 At3g161004776e-046
A5C8F3 Putative uncharacterized protein (Fragment)4704e-045
A5YVS2 Rab74704e-045
B7FN46 Putative uncharacterized protein4704e-045

Arabidopsis top hits (Blast detail)Scoree value
AT1G52280.1 AtRABG3d (Arabidopsis Rab GTPase homolog G3d); GTP binding4891e-049
AT3G16100.1 ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C); GTP binding4774e-048
AT3G18820.1 ATRAB7B (ARABIDOPSIS RAB GTPASE HOMOLOG G3F); GTP binding4586e-046
AT1G49300.1 RABG3E (RAB GTPASE HOMOLOG G3E); GTP binding4542e-045
AT1G49300.2 RABG3E (RAB GTPASE HOMOLOG G3E); GTP binding4542e-045

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
91  50%
 
121  50%

Unigene MembersMember information