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Information for unigene UN16769
| FASTA Sequence |
| Unigene ID: UN16769 | Length: 746 |
| SNP | GATTTCATTGTCAAACCAGAAAAAAATTGTTACAAAAACTTAGTCCACACTCCCCATTTCTATATAAACATCAACTTAAGCAACAA
TAATAACACAAAATAAACCTTAACAAAAGAAAGAAGAAAAAAAAAGACTAACAAAATGGCCAAGGCTTTTACTCTGTTTCCAACCC
TTATGATACTCAGTTTCTTCATAATCTCTTCCCCTCTGATCCAAGCCGGCTTCACCAATGACATGGACGGTCTGGAATGGGCCACG
AACGGTGTCCATGACCACTCCTCAGGCTGCCACGGTTCAATAGCAGATTGTATCGGGGCAGAGGAAGAGGAAATGGACACAGAGAT
CAGCAGAAGAATATTGGCGACAACAAAGTACATAAGCTATCAATCTTTGAAGCGGAACAGTGTGCCATGTTCGAGAAGAGGAGCGT
CATATTATAATTGTCAGAACGGAGCTCAGGCTAATCCTTATAGTCGTGGTTGCAGCTCAATTGCTCGTTGCAGGAGTTAGCGCTCC
ACAAAGAAGTTCTCCTTCTCTCTTCATTATGCTGTCTTATAATTAATTATACGGTACTCACATAAGTTGGATTTGGATGTGAATGA
CCTTTGTTTGTTCCGTGATGATCCATGACGTGATTAGTGTTTCTTTAAGCTTTTGAATATTTCATGTGTATATTCTCTGTATCTCT
TGCTCAGTAATACTAAAAATAAGTTTGATCAAGACCAGGTTTGGTTTGATCCGGTAAA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002892134 hypothetical protein ARALYDRAFT_470261 [Arabidopsis lyrata subsp. lyrata] | 519 | 1e-050 |
| NP_171789 rapid alkalinization factor 1 [Arabidopsis thaliana] | 516 | 2e-050 |
| ABN08027 Rapid ALkalinization Factor [Medicago truncatula] | 334 | 3e-029 |
| XP_002512426 RALFL33, putative [Ricinus communis] | 326 | 2e-028 |
| XP_002882418 hypothetical protein ARALYDRAFT_477838 [Arabidopsis lyrata subsp. lyrata] | 325 | 3e-028 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9SRY3 At1g02900 | 516 | 1e-050 |
| A2Q327 Rapid ALkalinization Factor | 334 | 2e-029 |
| B9RFA7 RALFL33, putative | 326 | 2e-028 |
| A9PCI6 Predicted protein | 320 | 8e-028 |
| Q84UC9 Rapid alkalinization factor 1 | 320 | 8e-028 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G02900.1 RALF1 (RAPID ALKALINIZATION FACTOR 1); signal transducer | 520 | 3e-053 |
| AT3G05490.1 RALFL22 (ralf-like 22); signal transducer | 320 | 5e-030 |
| AT4G15800.1 RALFL33 (ralf-like 33); signal transducer | 301 | 8e-028 |
| AT3G16570.1 RALFL23 (ralf-like 23); signal transducer | 269 | 4e-024 |
| AT4G13950.1 RALFL31 (ralf-like 31); signal transducer | 196 | 1e-015 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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