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Information for unigene UN16855

FASTA Sequence
Unigene ID: UN16855Length: 1108 SSR 
GGGATCCTTCCATAGAAAGATAAAGAGAGAGAGAGAGAAAAGGTTGCAACTTTGACGATTCCGACATCTAAAGGATTGTAATTGAC
CGCAAGAAAAAAGATTCCTCGCTCCTTCCCTCGGCTCAAAGCAAGAATCTTTCATTCATGACGACCAATTTCGATGACTCTTCAAA
GCAACTCGTCTTGCTTGCATCTGTTTGTTCCGGCGTCCTCATGTGCAAAATCGTTTATGACTTGACTGGTTTCATAAGTCCTTTGC
TCTTCAGTGCTTATGGGAAACTCGACGGCAAAGTTAGAATGGAATGGAACAACAGGGGATTCTCAACGTTCCATGCTGTTTTTGTT
TCTGTGGCATCAATCTATCTCCTGGTGATTTCAGATCAGTTTGATGAGAGTGTTCATGGTGATTCGGTCATCAATAGTACAACGAG
GTTGTCTGAATCTGTAATGGGGATCTCCTTAGGCTATTTTGTAGCAGACTTAATGATGATCTTTTGGCATTTTCCTACTCTTGGTG
GTGTTGAATATGTTTTCCATCACTGCTTATCGATGTTCTCCGTCATTCTTTCTGTCACAAGTGGACAAGCGCAGTTCTACATATTC
ATGGTTCTCTTGTCTGAGGCCACTACCCCGTTTGTCAGCCTACGGTGGTACTTGGATGCTAGTGGTCAAAAAGGCTCCAAGGCTTA
CACACTCAATGGGATTGCCCTGTTCTTGGGTTGGCTGGTAACGTTTGATAGACCAAAACAATAATCTCTTTTGTTCTGAGCATTAA
CCGTATGTAAAATTGCTTCTCTTACAGGTCGCGAGGATCCTTTTGTTTATCTACTTCTTTGTACACATGTACTCCCATTTCCACCA
GGTGATTTCAATGCTGAGCTTTTGAGCAAAATAAACATGCACCTTTTTAAGAGATGTGAATCTAAAAAGTTGCACTTTTTTGCAGG
TGAAGCAAGTGTTTCCACTGGGGTTTTACAGCCTTATTGCGGTTGGACCGGTCCTGTCGGCGATGAATCTTCTTTGGTTCTGGAAA
ATCACCAAAGGATTGATCAAAACAATCTCCAAGGCGACGGGAAAGAAAAAACAGTGATGGTCTCTGCTTGACTTGG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAJ33804 unnamed protein product [Thellungiella halophila]9134e-096
NP_567355 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein [Arabidopsis thaliana]8921e-093
AAM61723 unknown [Arabidopsis thaliana]8874e-093
XP_002872510 hypothetical protein ARALYDRAFT_911336 [Arabidopsis lyrata subsp. lyrata]8812e-092
CAB39789 hypothetical protein [Arabidopsis thaliana]6779e-069

Swiss-Prot top hits (Blast detail)Scoree value
Q6PGS5 Transmembrane protein 56-B2132e-016
Q5XIY2 Transmembrane protein 56-B1981e-014
Q6GLX2 Transmembrane protein 56-A1863e-013
Q6P4N1 Transmembrane protein 561802e-012

TrEMBL top hits (Blast detail)Scoree value
Q93ZA9 AT4G10360 protein8927e-094
Q8LEX4 Putative uncharacterized protein8873e-093
Q9SV86 Putative uncharacterized protein AT4g103606776e-069
B9SK69 Putative uncharacterized protein6193e-062
B9IQX6 Predicted protein6176e-062

Arabidopsis top hits (Blast detail)Scoree value
AT4G10360.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31300.2); Has 453 Blast hits to 451 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 225; Fungi - 97; Plants - 91; Viruses - 3; Other Eukaryotes - 37 (source: NCBI BLink).8924e-096
AT4G10360.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31300.2); Has 453 Blast hits to 451 proteins in 101 species: Archae - 0; Bacteria - 0; Metazoa - 225; Fungi - 97; Plants - 91; Viruses - 3; Other Eukaryotes - 37 (source: NCBI BLink).8924e-096
AT1G31300.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19645.2); Has 478 Blast hits to 478 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 269; Fungi - 98; Plants - 80; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).4973e-050
AT1G31300.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G19645.2); Has 478 Blast hits to 478 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 269; Fungi - 98; Plants - 80; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).4973e-050
AT4G19645.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: TRAM, LAG1 and CLN8 homology (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31300.2); Has 401 Blast hits to 401 proteins in 98 species: Archae - 0; Bacteria - 0; Metazoa - 186; Fungi - 102; Plants - 84; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).4686e-047

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
91  33%
 
102  67%

Unigene MembersMember information