RadishBase

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Information for unigene UN16856

FASTA Sequence

Unigene ID: UN16856	Length: 1078	SSR
ATAACTTCAAACAACACGAACTAGATCCATTAAATTCTTGGCGGTGAGGACAAGATCTCGACAACTAGTAAAAGTTTATTCTGAAA AAAGAAAACAAAAACAAAAAACAAAAGATCTTGACCAGCATTTTGAATAAGGACACGAGTTTCTTGCCACAGAACCGGCAAAAGTC TATTAAAAAAAATCGCGACCAGCATTTTGGATATCTCACTGCTGGGCACATTGCACGCGCTGAGCACCGCCTGGACCTTCTTCATC ATCATCGTCATCATCATAAGCCTCTCTCTGAGCACGAGCCTTCTTTCTCATCTCATCCTCCATGTCCACATCGTGCAGCGTCGTCT CTTCGCACTCGTCTATCTCCTGTCGCTCAGAGTCGCCTTCGCTGGCCTCGGCAAAACCGCTTCAATGGCCTTTGTCTGGTTCGGGC CCAGCGAGTCTGGGAACTCTACGGTGAAGTGGATGTACAGCTTACCCTTCATGAAGGGCCTTTGGTGTATCGGCATTCCCTCGTCG CTTATCGCCCTGTATGAATCTGGCTTACACTTTGAGCACAAAGCCTTCCTAGAGAGCGAAAGCTTCTTCGTTGTTCCGAGATAAAG ATCCTCTAGAGAAACCTTCAGAGGGTGAACAACATCTTCACCACGCCTCTGCCTCCTTCCACGGCTACTACCACCTCCGAAAGGGT GTCCACCACCACCACCACCAAAGAAGGAGGAGAAGATATCAAAGGGGTCGTGACCACCGCCTCCACCGCCCATTCCTTCCTTGAGC GCGTCCTCACCATACTGATCGTAGATCTCACGCTTCTCTGGATCGCTTAGAACTTCATAAGCCTGAGCTAGCTCCTTGAACTTCTC GGGATATCCACCCTTGTCGGGATGGTTTTTGATGGCGGCTTTCTTGTAAGCCTTTTTGAGATCTTCAGGTGAGGCGGTCTTGGGAA CGCCGAGGATCTCGTAGAACTTGGTGTTGTCGCTCTTACTCGAAGGTCCTCTTCTGAACATCTTTCTCCGTTTTTAAGAAAACCCT AAAAACAGAGAGGAGAGATGTAGAGAGAGAGAGATGAGAGTTTTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002874044 hypothetical protein ARALYDRAFT_489058 [Arabidopsis lyrata subsp. lyrata]	745	1e-076
NP_568412 chaperone protein dnaJ 2 [Arabidopsis thaliana]	741	3e-076
AAB86799 putative [Arabidopsis thaliana]	741	3e-076
NP_189997 chaperone protein dnaJ 3 [Arabidopsis thaliana]	732	4e-075
NP_850653 chaperone protein dnaJ 3 [Arabidopsis thaliana]	732	4e-075

Swiss-Prot top hits (Blast detail)	Score	e value
P42825 Chaperone protein dnaJ 2	741	1e-077
Q94AW8 Chaperone protein dnaJ 3	732	2e-076
P43644 DnaJ protein homolog ANJ1	667	5e-069
P42824 DnaJ protein homolog 2	666	7e-069
Q04960 DnaJ protein homolog	652	3e-067

TrEMBL top hits (Blast detail)	Score	e value
Q0V7U1 At5g22060	741	2e-076
Q0WW92 DnaJ protein homolog atj3	732	2e-075
Q3EAQ4 Putative uncharacterized protein At3g44110.2	732	2e-075
Q2XTC7 DnaJ-like protein-like	698	2e-071
Q38HT9 DnaJ-like protein	698	2e-071

Arabidopsis top hits (Blast detail)	Score	e value
AT5G22060.1 ATJ2; protein binding	741	1e-078
AT3G44110.1 ATJ3; protein binding	732	1e-077
AT3G44110.2 ATJ3; protein binding	732	1e-077
AT3G62600.1 ATERDJ3B; heat shock protein binding / unfolded protein binding	310	1e-028
AT1G80030.1 DNAJ heat shock protein, putative	286	7e-026

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	2			67%


19	1			33%

Unigene Members	Member information