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Information for unigene UN16858
| FASTA Sequence |
| Unigene ID: UN16858 | Length: 1423 |
SSR | | GGAACCACAGATCCAAAACGCGACTTCGGAAAAGCAAAGTCTCTCTCTCTCTCGAGTCCAAAGCCAGAGTTTCGAGATTCGTTAAC
CGATCTAAACAGAAAAGAAGCCAATGTCAGAGACCGCCGTGCACGGAGAAGCAATCGAGTGGGAGTCCGAAGACGAAGATTCCGAT
GACGCAGAAGAAGAAGAAGAGTATACCTCGCCGTCGCAACCACCGTCTTCGGCGAATTTCGATAAAGATCGACACTTGGTGTATTT
GCAGATGATGTACGAGCTGCTTCCGTACCATTACCAATCGCAGGAGATCAATCGACTCACCCTCGCTCACTTCATAATCTCCGGAC
TTCACTTTCTCGGCGCAACAGACCGTGTTGACAAAGATGTAGTTGCGAACTGGGTTCTGTCCTTCCAGGCCTTCCCTAGGAACAGA
GCTTCACTCAAAGAAGGTGAATTCTACGGGTTCTACGGTTCAAGGAGCTCTCAGTTTCCTATAGATGTTAATGGGGATCTAACTCA
TAACAACAGTCACCTGGCAAGTACATACTGTGCCTTGGCTATTCTTAAGGTGATTGGGCATGATCTCTCGACCATCGACTCTCAAT
CACTGTTGTTATCCATGAATAATCTTCAACAAGATGATGGAAGCTTCATGCCTATCCATACTGGAGGCGAGACGGATCTTCGGTTT
GTATATTGTGCTGCTGCAATCTCTGACATGCTGGGTGATTGGAGTGGAATGGACAAGGAGAAGGCTAAGAATTACATATTAAATTG
TCAGTCATATGATGGTGGCTTTGGGTTGATCCCTGGTTCTGAATCTCATGGTGGTGGTACTTACTGTGCTATTGCATCCCTTAGAT
TGATGGGGTTTATTGGAGCTGATCTGCTGTCAAATGATCCATCCAGTTCAATTCTAGACCCTTCATTGCTTCTCAACTGGAGCCTA
CAGAGACAAGCCAGTGATGGTGGCTTTCAAGGTAGGACTAACAAACAGAGCGACACATGCTATGCATTTTGGATTGGAGCTGTCCT
TAAACTCATAGGAGGCGATGCATTCATTGACAAAATTGCTCTCCGCCAATTTTTACTGAGCTGCCAGTCCAAGTATGGTGGGTTCA
GTAAATTTCCTGGAGCGTTACCAGATCTGTATCATTCATACTATGGCTACACTGCGTTTAGCTTCTTGGAGGAACCGGGATTGAGT
CCTCTATGCCCTGAGCTAGGGTTACCTCTTCTTACATCCTTGGGAATCTGATTCCCCCTCAAAGTCCCCCACATTCTTTTTTATCA
ACCCAACTGTAACTTTTATTTGGTATTTGATTATTGGTTTATGTATTTTAATTGATTTAGAAATCAAAACTAAATCCAGAATTTTA
GTGTCATATATTTACCTATGATTTTATAAATTTTAATTTGATATTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_181487 geranylgeranyl transferase type-1 subunit beta [Arabidopsis thaliana] | 1667 | 2e-183 |
| AAG40865 geranylgeranyltransferase beta subunit [Arabidopsis thaliana] | 1552 | 4e-170 |
| XP_002879805 geranylgeranyltransferase-I beta subunit [Arabidopsis lyrata subsp. lyrata] | 1541 | 8e-169 |
| XP_002532295 geranylgeranyl transferase type I beta subunit, putative [Ricinus communis] | 1324 | 1e-143 |
| XP_002278609 PREDICTED: hypothetical protein [Vitis vinifera] | 1319 | 5e-143 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q5EAD5 Geranylgeranyl transferase type-1 subunit beta | 440 | 2e-042 |
| P53610 Geranylgeranyl transferase type-1 subunit beta | 435 | 6e-042 |
| Q8BUY9 Geranylgeranyl transferase type-1 subunit beta | 432 | 1e-041 |
| P53609 Geranylgeranyl transferase type-1 subunit beta | 430 | 2e-041 |
| P32434 Geranylgeranyl transferase type-1 subunit beta | 349 | 6e-032 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O80642 At2g39550 | 1667 | 1e-183 |
| Q9FPP6 Geranylgeranyltransferase beta subunit | 1552 | 3e-170 |
| B9T226 Geranylgeranyl transferase type I beta subunit, putative | 1324 | 8e-144 |
| B9HMG6 Predicted protein | 1280 | 1e-138 |
| Q6EMC1 Geranylgeranyltransferase type I beta subunit | 1215 | 4e-131 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G39550.1 PGGT-I; CAAX-protein geranylgeranyltransferase/ protein heterodimerization | 1668 | 6e-186 |
| AT5G40280.1 ERA1 (ENHANCED RESPONSE TO ABA 1); farnesyltranstransferase/ protein farnesyltransferase | 199 | 1e-015 |
| AT3G12070.1 geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative | 176 | 6e-013 |
| AT3G12070.2 geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative | 176 | 6e-013 |
| AT5G12210.1 geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative | 175 | 8e-013 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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