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Information for unigene UN16870
| FASTA Sequence |
| Unigene ID: UN16870 | Length: 1124 |
| SNP | GGTAACACTCTTGACTACTAAACTCCGACCATTTCTGCATTCTCCCGGAAGACTTGTACTTGCGTGTTTCTATGTAAGAAAATTGA
AAGAAAATCTGTAAAGAACGAGTCAAGAGATCCAGACGTGTGTATAAAAGGAATCAAATCGGAAAAAAAAATGGAGAAGAAGAAGG
TGCCAAAAAGACTCCAAGGTAAAGTAGCGATCGTGACGGCATCGACGCAAGGGATAGGCTTCGGTATCGTTGAGCGGCTTGGCCTC
GAAGGCGCTTCTGTCGTCGTCTCCTCTCGCAAACAGAGAAATGTGGATGAGGCGGTAGAGAAGCTTAAAGCTCAGGGGATTGATGC
ATTTGGAATCGTTTGTCATGTCTCTAATGCTCAACATCGCCAGATTCTCGTCCAAAAGACAGTTCAAAGATATGGGAAGATAGATA
TTGTTGTGTGTAATGCAGCGGTGAATCCATCTACTGACCCAATCTTATCTACTCAAGAATCTGCTCTTGACAAGCTTTGGGAAGTC
AATGTCAAATCATCTATCCTTCTCCTCCAGGATATGGCTCCTCACTTAGAGAAGGGTTCTTCTGTAATCTTCATAACCTCCATTGC
TGCGTTTCAACCGCAAGTACCAACGGCAATGTATGGAGTTACTAAAACAGCTCTTCTCGGCCTAACCAAGGCACTTGCTGCTGAGA
TGGGACCGGACACAAGAGTGAACGCAGTAGCACCTGGTGTTGTGCCAACACATTTTGCTTCTTTCATCACCCGGAACTCTGAAGTG
AGAAGAGCCAATGAGGAGAAAACTCTGCTCAACAGGCTGGGAACAACGGATGACATGGCCGCTGCAACCGCTTTCTTGGCTTCTGA
TGATGCTTCTTACATCACCGGTGAAACTTTAGTGGTCGCCGGAGGAATGCCCTCCAGGCTCTGAATCAAAATCCCCAACTAGTAAT
AATTTATATCTCAACAAAACTTGTTGAAGGACAAGAAAACCACGCATTTGTTACTGTTGTGTGATCGTGTGGAATGGTTTAATTTC
TCATTTTGAATAATAGTAGATGGAACATACCTTATCTACCAAAGATTACTTTCATGACAATCTAATGGATACAAGGAAACAAATTC
TTTGCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002874790 short-chain dehydrogenase/reductase family protein [Arabidopsis lyrata subsp. lyrata] | 1092 | 7e-117 |
| NP_567300 dehydrogenase/reductase SDR family member 4 [Arabidopsis thaliana] | 1084 | 6e-116 |
| XP_002264497 PREDICTED: hypothetical protein [Vitis vinifera] | 1012 | 1e-107 |
| XP_002518407 short-chain dehydrogenase, putative [Ricinus communis] | 967 | 2e-102 |
| XP_002316593 predicted protein [Populus trichocarpa] | 943 | 1e-099 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9BTZ2 Dehydrogenase/reductase SDR family member 4 | 584 | 2e-059 |
| Q5RCF8 Dehydrogenase/reductase SDR family member 4 | 582 | 4e-059 |
| Q8WNV7 Dehydrogenase/reductase SDR family member 4 | 557 | 3e-056 |
| Q13268 Dehydrogenase/reductase SDR family member 2 | 554 | 7e-056 |
| Q9GKX2 Dehydrogenase/reductase SDR family member 4 | 550 | 2e-055 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9S9W2 AT4g05530 protein | 1084 | 4e-116 |
| B9RXD8 Short-chain dehydrogenase, putative | 967 | 1e-102 |
| A9PHB3 Predicted protein | 943 | 9e-100 |
| C6TLW3 Putative uncharacterized protein | 931 | 2e-098 |
| B0M195 Peroxisomal short-chain dehydrogenase/reductase family protein | 927 | 7e-098 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G05530.1 IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1); binding / catalytic/ oxidoreductase | 1085 | 2e-118 |
| AT2G29150.1 tropinone reductase, putative / tropine dehydrogenase, putative | 314 | 4e-029 |
| AT5G06060.1 tropinone reductase, putative / tropine dehydrogenase, putative | 308 | 2e-028 |
| AT2G29260.1 tropinone reductase, putative / tropine dehydrogenase, putative | 298 | 3e-027 |
| AT2G29340.2 short-chain dehydrogenase/reductase (SDR) family protein | 295 | 7e-027 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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