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Information for unigene UN16873
| FASTA Sequence |
| Unigene ID: UN16873 | Length: 1428 |
SSR | | GAGGTAAACTAAAAGGATGAGTAATCAGAGAAAGAGACCCAACGGAGGAGAAAGAGAAGAAGATGACGAGGAGGACGATGCGGAAG
GTATCGGCCAGTGGGAGAGAGCTTATGTCGACGACAGATCCTGGGAGGCGTTGCAAGAGGATGAGTCTGGACTCTTACGGCCGATT
GATACCAGTGCCATTTACCATGCTCAGTATCGCCGCCGTCTCCGTATGCTCTCCGCCGCCGCGGCTGGTACTCGTATCCAGAAGGG
GCTTATCCGCTATTTATACATCGTCATTGACTTCTCTCGGGCAGCTGCGGAAACAGATTTCAGACCAAGCCGGATGGCCATAATGG
CAAAACATGTTGAAGCTTTCATTAGAGAGTTTTTTGACCAGAATCCTCTGAGTCAGATCGGTCTGGTCTCGATAAAAAATGGGATC
GCGCATACACTAACAGATCTTGGGGGTAGTCCTGAGTCACACATACAAGCGTTGATGGGAAAGCTGGAAGCTGCGGGTGACTCATC
TTTGCAGAACGCCCTGGAACTTGTGCACGAGCATCTCAACCAGATCCCATCTTATGGTCATCGCGAGGTTCTGATATTGTATTCAG
CTCTGAGCACCTCTGACCCGGGAGATATCATGGAGACTATTCAGAAATGCAAGAAATCAAGATTAAGATGTTCTGTTATTGGACTT
TCTGCAGAGATGTTCATATGCAAACACTTGTGCCAAGAAACTGGTGGGTTGTATTCCGTTGCAGTAGATGAGTGCATTTAAAGGAT
CTGCTGCTTGAGCATGCGCCTCCACCTCCGGCAATAGCAGAATTTGCAATTTCTAACCTGATCAAGATGGGTTTCCCACAAAGAGC
TGCTGAGGGTTCAATGGTGATATGTTCGTGTCATAAGGAAGTTAAGATCGGAGCTGGTTACACGTGCCCGAGATGTAAAGCTCGTG
TATGTGAGCTCCCTACGGAATGCACCATCTGTGGTCTGACGCTTGTTTCATCGCCGCATCTTGCGAGATCATACCATCATCTCTTC
CCAATTGCTCCATTTGATGAGGTTCCTATTCTGACAAGTTCGAATGATCCTCGGAGAAAACTGGGAAAGAGTTGTTTTGGTTGCCA
ACAGAGCCTACTTGGTGCAGGGAACAAACCGGGACCCTGCGTAACATGTCGGAAATGCAAGCACTATTTCTGTCTGGACTGCGACA
TATACATCCACGAGAGCTTGCATAACTGTCCTGGCTGCGAGAGCATTCACCGTCCCAAATCTGTTTCCTTGATGGAAGAATGAGAG
AATGTGTTCACACTCGCGCAATTTTTTCAAACGATTATTATTATTATTTTTTTTAATTGAATGTTAAATTTAATTCAAAAAGAAAA
AGACTTTGTTACAACGAAGTGTTTCCTTTTCCAAACTTTTTATACAAGAAAT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002892263 ATGTF2H2/GTF2H2 [Arabidopsis lyrata subsp. lyrata] | 1164 | 4e-125 |
| NP_683275 transcription initiation factor TFIIH subunit H2 [Arabidopsis thaliana] | 1160 | 1e-124 |
| XP_002284994 PREDICTED: hypothetical protein [Vitis vinifera] | 993 | 3e-105 |
| CBI16283 unnamed protein product [Vitis vinifera] | 993 | 3e-105 |
| XP_002526366 btf, putative [Ricinus communis] | 989 | 9e-105 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O74995 TFIIH basal transcription factor complex p47 subunit | 457 | 2e-044 |
| Q2TBV5 General transcription factor IIH subunit 2 | 430 | 2e-041 |
| Q6P1K8 General transcription factor IIH subunit 2-like protein | 429 | 3e-041 |
| Q13888 General transcription factor IIH subunit 2 | 429 | 3e-041 |
| A0JN27 General transcription factor IIH subunit 2 | 429 | 3e-041 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9ZVN9 P44/SSL1-like protein | 1160 | 9e-125 |
| B9SK47 Btf, putative | 989 | 6e-105 |
| C5YBY0 Putative uncharacterized protein Sb06g022140 | 975 | 2e-103 |
| B4G0C7 Putative uncharacterized protein | 966 | 3e-102 |
| B9N7M5 Predicted protein | 960 | 1e-101 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G05055.1 GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2); general RNA polymerase II transcription factor | 1169 | 4e-128 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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