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Information for unigene UN16887

FASTA Sequence
Unigene ID: UN16887Length: 876  SNP
ATTTTGGAAAGTAACAATTATTTATTTCTGAATATCGAGTAATTAAATTGTTAATTAACAATAAACTTTTCAACACAAATTTTCAA
GAAAAAGAGTTATACAGATTCAAGAAAGTAAAAGCTAATCAATCATTTGGTCCAACATCTGGTTTTCATGATCAATGATATCTAAA
ACCTTCAAAGGACTATGGTAGATCTACCGATCTGCCCCCACTGTTCCGTCTTGAACGTATTATCCGGCGAACTCCGACGATTTTAC
CGTTATATTAAACAGAGGAACATGGCGAAAAGAGCAAACATAACAGAACCAGAACCCATAAACCGATCTGAACCAGAACCTGGCGG
TGGCGTATGATAGTAAAACGGGAAATAAGGGACGATAGGGTTCGGCGGAGGCGGCGTGGGATAGTTTCCTGAATACGGGGGAGGAT
AGTAATAACCTTGGCCGCCGTCACCGTAAGGAGGAGGGTATTTGTCGCCACCGGACTGTGAAGGAGGAGGGTAATAGTAAGAGCTA
CCACCACCGGAGCTGGGAGGAGAAGGAGGCGGAGGACATGCGGTAGTGGTTGATGGTGACGGTGGTGGACGGGAAGGTGGCGGAGG
GGGAGGATATGATGGGACGGGATTACAAGGATTGTCGCAGGAAGAACACATTGTACAGGAAACAACCTCGTCCTTTGATGTCACTG
TCGAAGTCAGTGATAGTAGTAGAATGAGGACAAGTGTAGACAAACCATATAACTGGTTTGCTTCCATTGTCAGAGATTTGGATTCA
GATACTTGACTTTGAAGTCTGGAAATCTACAGAGGTAAGAGAGAGAGTGAGAAAAAGAAAGAAAGAAAGAAGAGGCGCATTGAGAG
GAGGAGTGTTCTTCCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_568708 hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana]7743e-080
XP_002865724 hypothetical protein ARALYDRAFT_494989 [Arabidopsis lyrata subsp. lyrata]7592e-078
XP_002870180 predicted protein [Arabidopsis lyrata subsp. lyrata]4796e-046
NP_193349 proline-rich family protein [Arabidopsis thaliana]4544e-043
XP_002314326 predicted protein [Populus trichocarpa]4303e-040

Swiss-Prot top hits (Blast detail)Scoree value
Q54WH2 Formin-A2079e-016
O53426 Proline-rich antigen homolog1881e-013
Q9FLQ7 Formin-like protein 201835e-013
Q9SN46 Leucine-rich repeat extensin-like protein 51835e-013
P78621 Cytokinesis protein sepA1754e-012

TrEMBL top hits (Blast detail)Scoree value
Q9FJ12 At5g492807742e-080
O23462 At4g161404543e-043
B9HX94 Predicted protein4302e-040
Q9M7Y1 F3E22.11 protein3962e-036
B9MZZ6 Predicted protein3872e-035

Arabidopsis top hits (Blast detail)Scoree value
AT5G49280.1 hydroxyproline-rich glycoprotein family protein7751e-082
AT4G16140.1 proline-rich family protein4542e-045
AT3G06750.1 hydroxyproline-rich glycoprotein family protein4003e-039
AT4G18670.1 protein binding / structural constituent of cell wall1835e-014
AT3G22800.1 leucine-rich repeat family protein / extensin family protein1818e-014

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  14%
 
94  29%
 
74  29%
 
104  29%

Unigene MembersMember information