RadishBase

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Information for unigene UN16894

FASTA Sequence

Unigene ID: UN16894	Length: 1326		SNP
GACATCTTAAAGACATACTAAAGGAAATAAATAAATGGTTTAGCTATGATGTTCTTAAAACAGCAACATCAGGTTTCTCTTCAGAG AATCTAATTAAAAAAGGAGGATGTAACGAAGTCTACAAAGGGGTTCTTGAAGATGGGAAAGCAGTGGCGGTGAAGATCTTGAAATC ATCTGGAAAAGAAGAAGCAGTGAAGGATTTTGTTCAAGAAGTGAGCATAATCTCTTCTTTGAATCACTAAAACATCTCTCCTTTAA TCGGTGTCTGCGTCCAATATGATGACCTTATCTCTGTTTACAATCTCTCATCCAGAGGAAGTTTGGAGGAGACCCTTCAGGGTAAG CATGTATTGACATGGGAAGCGAGATTCAAGATAGCAATTGGGTTAGGGGAAGCTCTTGATTATCTTCATAACCAATGTTCTAATCC TGTCATCCACAGAGATGTCAAATCTTCTAATGTTCTTCTCTCAGATGAGTTAGAACCTCAGCTGTCGGATTTCGGACTCTCGATGT GGGGATCAAAGTCTTGTTTATACACAATACAAAGAGACGTGGTGGGCACGTTTGGATACCTAGCTCCTGAATACTTCATGTACGGA AAGGTCAGCAACAAAGTTGATGTTTATGCCTTTGGAGTAGTTTTGCTTGAACTCATATCAGGAAGAACTACTATTTCTTCTGATAG CCCAAGAGGACAGGAGAGTTTGGTCATGTGGGCAAAACCGGTTATAGAAAAAGGTGCTGCAAAAGAGCTCTTGGATCCGAACATTT CAGGGAATCTCGATGAGGCTCAGTTTCAGAAAATGGTTCTTGCTGCTAAATATTGTCTTACAAGAGCAGCTACTCATCGTCCCAAT ATCAGAGAGATACTCAAGCTGCTAAAAGGAGAAGATGAAGTAGAGAAATGGGTGAAGAAAGTAGAAGAAGATGATGACTGTTTCGA CGACGAGGTTTACCCAAATTCAAACAAAGAACTACACTTGAGCCTTGCGATGCTCGACATCGAGGATAATGACTCTATTTCAGTTG GCAGCTTGGAGAGAAGTAACAATAGCCTATTTTCTTCTTCTCCATCTCAGGAGCTTCAGTCTTGATTAGGGTTTTCTTAGTCTCTC GAGTTTGCTTGAGGATTACGTCATCTTCCATGGTGTCTGCAATCAAATCAATCTAGCTATCCACTACTCTGACTTTGGCTTTTGCA ACCATTGTCGGAAAAGTGTTTTTTTTTTCTTCTTTTTTGGGTATAGATGAGAGGAGGATAATAAGACTTCCAAAATAATGATTAAA GTGTTCTAATTAAAATAAAAAGATTAAAGTGTTCAG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002884015 kinase family protein [Arabidopsis lyrata subsp. lyrata]	1634	1e-179
NP_179266 adenine nucleotide alpha hydrolases-domain containing protein kinase [Arabidopsis thaliana]	1574	1e-172
AAD24608 putative protein kinase [Arabidopsis thaliana]	1556	1e-170
NP_001190918 protein kinase-like protein [Arabidopsis thaliana]	1328	4e-144
XP_002305520 predicted protein [Populus trichocarpa]	1132	2e-121

Swiss-Prot top hits (Blast detail)	Score	e value
C0LGG7 Probable LRR receptor-like serine/threonine-protein kinase At1g53420	528	9e-053
Q8L4H4 Nodulation receptor kinase	524	3e-052
Q8LKZ1 Nodulation receptor kinase	521	6e-052
Q3EDL4 Probable serine/threonine-protein kinase At1g01540	519	1e-051
Q41328 Pto-interacting protein 1	518	1e-051

TrEMBL top hits (Blast detail)	Score	e value
B5X4Z9 At2g16750	1574	8e-173
Q9SLE3 Putative uncharacterized protein At2g16750	1556	1e-170
B9H1A0 Predicted protein	1132	1e-121
B9T7D3 ATP binding protein, putative	1107	1e-118
A5AP74 Putative uncharacterized protein	1079	2e-115

Arabidopsis top hits (Blast detail)	Score	e value
AT2G16750.1 protein kinase family protein	1575	3e-175
AT4G35030.2 protein kinase family protein	1087	1e-118
AT1G77280.1 protein kinase family protein	919	4e-099
AT1G21590.1 protein kinase family protein	874	6e-094
AT5G63940.1 protein kinase family protein	782	3e-083

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	2			13%


9	3			19%


8	7			44%


12	2			13%


11	2			13%

Unigene Members	Member information