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Information for unigene UN16897

FASTA Sequence
Unigene ID: UN16897Length: 1111  SNP
AACACCTTGATCATATGATCATATCCATGCCTTCTAGAACAGCTTAAGCAATGTCAATTATATTAAAACAGAGTTTGTCATCATAT
AACCATAGAGATAGCTTCATAGTACACCATGTAATATCATACTCATTATTAAAGTCTCCCGACGAAAGTTAACCTTTTGGGGTTTA
TTTGAAACATTTCGTCAGACGAGAGGTAGATCAAAAGGGGGTTTTAGATCACTTCCACTTCTTGAACTTACCTCCTCCAAACATCC
CATGCCTCCCATGTTTGCCTCCATGATGCTTGAACTTCCCGTGCTTGAACTTACCATGACCATAACCATAACCATAGCCAGGACCA
TGACCATGGCCAAATCCGTGACCATATGCAGCGTGTCCGTAAGGGCCGTGAGAGCTATGAGCTATGTGGTGAGCTCCATAGGCAGC
TGCAGCACCTGCAATCATACCCCCTATTCCAGCTGCGTGTCCTGAGTGATGAGCAGGATAGCCAGCAGGAGGATAACCAGCATGAC
CAGGCGCAGGAGGATACCCACCGTAGCCAGGAGCAGGAGGGTAGGCACCAGGTGGAGGTGGGTAAGCACCCGGAGGATAACCAGGT
GCAGGTGGGTAGGCACCATGTGGTGGTGGTGGAGGAGGGTAAGCTTGATGTGGTGGGTATCCAGCTGGTGGATAAGCCCCATGACC
CGACGGGTATCCAGCGGGTGGGTACCCAAAAAAACCTTTGTCTTTCTCTTCGTCACCTCCCATGTTTTCTCTCAATCAACAAAACA
AAACCCGAGACGAATCGCGAGACAATAATGTCGAAACTGATTTGCAAAACAGAAAAAACACAAAAGAGAAGATCTTTTGGGGATAA
GTATTGGTGGTTTTGCTTAACACATACATTTATTTCCTTAAGCGGCACGGTTTCCGAAAAAGATATATTTTAATCTTTTGGTCCTC
ATACTTTGGGTTTTCTTCCTAACCGAACACTTATTCCTTATAAATGATAATGGAGTCCAGATTTTCAACACCAGCAGCAACGACAC
ATCAGATATGTAACGATGGTAGAAAGGGCTCTCAACAAGTATTATTGAAATCTTTAGTGAGATATGGTTAATTGCATCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002863487 expressed protein [Arabidopsis lyrata subsp. lyrata]8042e-083
NP_568642 proline-rich family protein [Arabidopsis thaliana]8023e-083
XP_002869995 expressed protein [Arabidopsis lyrata subsp. lyrata]5192e-050
XP_002319217 predicted protein [Populus trichocarpa]3077e-026
XP_001699678 proline-glycine-tyrosine rich protein [Chlamydomonas reinhardtii]2782e-022

Swiss-Prot top hits (Blast detail)Scoree value
P24639 Annexin A72114e-016
P47953 Galectin-31622e-010
Q6NWC6 Cleavage and polyadenylation specificity factor subunit 61551e-009
A3AB67 Formin-like protein 161532e-009
Q9XIL9 Pollen-specific leucine-rich repeat extensin-like protein 31523e-009

TrEMBL top hits (Blast detail)Scoree value
Q39115 AT5g45350/MFC19_18022e-083
Q0DL76 Os05g0119300 protein5253e-051
Q6V8K5 GPRP5253e-051
O49678 Putative uncharacterized protein T18B16.1704591e-043
B9I6F5 Predicted protein3075e-026

Arabidopsis top hits (Blast detail)Scoree value
AT5G45350.1 proline-rich family protein8039e-086
AT5G45350.2 proline-rich family protein8039e-086
AT4G19200.1 proline-rich family protein5725e-059
AT1G31750.1 proline-rich family protein3541e-033
AT5G41390.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461); BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT1G63830.2); Has 12019 Blast hits to 5816 proteins in 448 species: Archae - 6; Bacteria - 1151; Metazoa - 4980; Fungi - 1500; Plants - 2605; Viruses - 338; Other Eukaryotes - 1439 (source: NCBI BLink).1721e-012

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
191  7%
 
104  27%
 
64  27%
 
85  33%
 
71  7%

Unigene MembersMember information