RadishBase

| | | |

Information for unigene UN16901

FASTA Sequence

Unigene ID: UN16901	Length: 1327	SSR
GGCTCAAGGAGAGATCACAATCTATAAATGTTTCTCATTACATTATCAGGTTCAATGGTGAATCAAGTTCCACATTGTATTTCAAT CCATAATATAGCAAGTTTCCTAAAATAGACAAATATACTGAAGATCCTCAGGACAACATATAGCCACACTTATGTCTACGAATCCA AGTCTTAATTGTGTCAATAAATTTTTATATATAAAACAGGGTGGTCTTTTTGCTGGAGAGGTTGATCACAGCATTAGAATTTTGAT CACATGACTTTCAGAGCATCCAGTCTGGGATGTAACCTGGCTGTGCCTGAGCTTGTGTTGTTGCAGTTATCTGCTCCGAGCATACT GGATTGTCATACCCCATCTGCAGAGTTGGATTGCATTCAAGAGGCTGGAATAGTCCTTGAGACTGAGCTTGATGATGCACGTAGGA AGCATTATGTTCGTTACCTTCCCATCCTCCTTCACCCATATGATGACTTCTCACACCAATCATATCATCCAGCTTCATAGCCAAAG CTCTATTGGTTTCAAGCAACATTTGCTCTTTGTTTTGAAGATCAGAGAGCTGGTCAAGCATGTACTGTGTCTTGATGGAGCGAACT TGCTTGAGAGAGCCATCTAGTTGACGCTCAATCTGCTCTAGTTCCTTTGAATTCAAAGGTCCTAAATCCTCACCAAGAAGATTTCT TTGTTGACGCTGAAGGCCCTCATATCTACCCTTAAGCTTCAGATACTCTCTGTAGCTGTTCTCAAGTTCTTTGGCAGGTTTGTTGT TGACTTCAATAGAACCGTAACTGCATTTCTGGTACCGTTCTAGTGTCTTGATCATGTTTGGGGAGCTGCAAAACTCATAGAGCTTG CCACGGTTGGAGAAGATGATGAGAGCAACCTCAGCATCGCAAAGAACAGACAGTTCGTAAGCTTTCTTCAACAAACCATTCCTACG CTTTGCAAAAGTTACTTGTCTGTTGATCTTGTTCTCTATCCTCTTCAGCTCTACTCTTCCCCTTCCCATTTCTTTTTTTTTTTTCG TTCCTCTATAGTTTCCTCTTGTATATATATGGGTATGTAAATGTTTATCTATATACAGACACACAAAAATTCTGATATCTGGTCTT TTTATAGTTCTTTATGGTCGTCTTGAGAAAGGAAATATGCCCTAATTTCAAGAACAAGGTACCATAGGGTTCTTGTTTCTCTCTCT CTCTCTCTCTCTCTCTATGTTTTGGAAGTGTGTGGAGGTTGTGAATCTAGTTGAGATTTTTTCTGTGGAAATAGAATCTATTGGGA GTTAAAGATAAGAAAATGTTTTAGTCGTAGAAAAAAA

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
CAD48303 MADS-box protein SEP1-a [Brassica oleracea var. botrytis]	1253	2e-135
AAA32732 transcription factor [Arabidopsis thaliana]	1202	2e-129
XP_002873742 hypothetical protein ARALYDRAFT_909555 [Arabidopsis lyrata subsp. lyrata]	1201	2e-129
NP_568322 developmental protein SEPALLATA 1 [Arabidopsis thaliana]	1199	3e-129
ABD96852 hypothetical protein [Cleome spinosa]	1115	2e-119

Swiss-Prot top hits (Blast detail)	Score	e value
P29382 Developmental protein SEPALLATA 1	1199	1e-130
P29384 Developmental protein SEPALLATA 2	1068	2e-115
Q03489 Agamous-like MADS-box protein AGL9 homolog	738	4e-077
O22456 Developmental protein SEPALLATA 3	731	3e-076
Q38694 Agamous-like MADS-box protein AGL9 homolog	718	9e-075

TrEMBL top hits (Blast detail)	Score	e value
Q8GTF1 MADS-box protein SEP1-a	1253	1e-135
Q5XXN7 SEPALLATA1	1202	1e-129
Q5XXL8 SEPALLATA1	1201	1e-129
Q5XXN8 SEPALLATA1	1199	2e-129
Q1KUY4 Putative uncharacterized protein	1115	1e-119

Arabidopsis top hits (Blast detail)	Score	e value
AT5G15800.1 SEP1 (SEPALLATA1); DNA binding / transcription factor	1200	1e-131
AT5G15800.2 SEP1 (SEPALLATA1); DNA binding / transcription factor	1071	9e-117
AT3G02310.1 SEP2 (SEPALLATA 2); DNA binding / protein binding / transcription factor	1069	2e-116
AT1G24260.1 SEP3 (SEPALLATA3); DNA binding / protein binding / transcription factor	731	2e-077
AT1G24260.2 SEP3 (SEPALLATA3); DNA binding / protein binding / transcription factor	731	2e-077

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	1			11%


11	2			22%


6	4			44%


12	2			22%

Unigene Members	Member information