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Information for unigene UN16904
| FASTA Sequence |
| Unigene ID: UN16904 | Length: 1443 |
SSR | | TATAGAGAGAGACATCTTCTCCTTGTCTTCTTCTCTTCTAATCTCTCTTTGCTTCTCCTCCTCCTCCTCTTCTCGAGCTTCGAGAT
CCATCAACGATGGCCACCGATGAGCCTTCTCTCACTCGCTGGAGCTTCCTGTTTGGGAGGAAGAAGCTGCCTGAAGAGCCCCAGGA
ATCAAAGCCAGAAGATGGATCATCCAGCAACAAGCAAGAAGATTCTTCCCAAGTCGTCACCAATCCAGCTCAGGAGGGTAACACTG
GCGTGGCCAATGGAATCTGTGAGAAGCCAAAGAAGTCAATGTTCCCACCTTTTGAATCTGCAGAAACTCGTGCTCTCGCTGAGAGT
CTAAGCAGGGATATCATCCGTGGGAACCCAAATGTGAAGTGGGAAAGCATCAAGGGTTTAGAGAACGCTAAAAGGTTGCTCAAGAA
GCTGTGGTCATGCCTATCAAATACCCCTCGTACTTTAATGGTCTGCTATCTCCATGGAAAGGGATTCTTCTTTTTGGCCCACCTGG
TACCGGAAAGACTATGCTTGCAAAGGCTGTTGCTACATAGTGCAACACAACGTTCTTCAATATCGCAGCATCATCTGTTGTTAGCA
AATGGAGAGGTGATTCTGAGAAGTTGATAAGAGTGCTGTTCGATCTAGCTAAGCATCACGCTCCTTCTACTATATTTCTTGATGAA
ATAGACGCGATCATAAGCCAGCGTGGTGGTGAAGGACGCAGTGAACATGAAGCAAGTAGGCGTCTCAAAACCGAGCTTCTGATCCA
GATGGATGGGTTACAGAAAACGAATGAGCTCGTGTTTGTTTTAGCAGCAACAAACCTTCCCTGGGAGCTTGATGCAGCTATGCTCA
GGCGTCTAGAGAAGAGAATTCTTGTACCATTACCGGATCCGGAAGCAAGAAGAGGAATGTTTGAGATGCTCCTGCCGTCACAACCA
GGTGATGAGCCATTGCCTCATGATGTGCTGGTTGAGAAATCAGAGGGCTACTCTGGTTCAGACATTAGGATACTTTGCAAGGAAGC
TGCAATGCAACCATTGAGACGTACATTGGCTGCATTGGAAGACACAGAAGAGATTGTACCTGAAGATGAGTTGCCAAAAGTGGGAC
CTATCCTACCAGAAGACGTTGACAGAGCTCTCAGCAACACTCGACCATCGGCTCATCTGCATGCACATCTGTATGACAAGTTCAAC
GATGATTATGGTAGCCAAATCCTCAAGTAAATTCGATGGAACTTACATATATACTTATATATGCCATCTATAGCTTCATTTTTATT
TGTAAGGGAAGCATCAAGATTTGGTTCTCTCAGTGACTTCTATTGGTTATTATATTTAAGAAGAAGAAAAAAAAACTTATAGTTGC
TTTGTTGTAGCACTTTATTGGGGCAATTTATTTTTTTCATAAATAAAAACTCTAAGTGTTTCAGCTC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002879503 hypothetical protein ARALYDRAFT_482419 [Arabidopsis lyrata subsp. lyrata] | 1353 | 5e-147 |
| NP_973600 P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] | 1351 | 9e-147 |
| NP_565791 P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] | 1351 | 9e-147 |
| XP_002305703 predicted protein [Populus trichocarpa] | 1197 | 7e-129 |
| XP_002519683 Katanin p60 ATPase-containing subunit, putative [Ricinus communis] | 1179 | 8e-127 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| A0JMA9 Katanin p60 ATPase-containing subunit A-like 2 | 781 | 5e-082 |
| Q8IYT4 Katanin p60 ATPase-containing subunit A-like 2 | 769 | 1e-080 |
| Q9D3R6 Katanin p60 ATPase-containing subunit A-like 2 | 762 | 8e-080 |
| Q9SEX2 Katanin p60 ATPase-containing subunit | 641 | 8e-066 |
| O61577 Katanin p60 ATPase-containing subunit | 636 | 3e-065 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O64691 AT2G34560 protein | 1351 | 6e-147 |
| Q3EBN1 AT2G34560 protein | 1351 | 6e-147 |
| B9H2B4 Predicted protein | 1197 | 5e-129 |
| B9S114 Katanin p60 ATPase-containing subunit, putative | 1179 | 6e-127 |
| B9NBM3 Predicted protein (Fragment) | 1160 | 9e-125 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G34560.1 katanin, putative | 1352 | 3e-149 |
| AT2G34560.2 katanin, putative | 1352 | 3e-149 |
| AT1G80350.1 ERH3 (ECTOPIC ROOT HAIR 3); ATP binding / nucleoside-triphosphatase/ nucleotide binding | 641 | 7e-067 |
| AT2G27600.1 SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1); ATP binding / nucleoside-triphosphatase/ nucleotide binding | 561 | 1e-057 |
| AT3G27120.1 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding | 538 | 6e-055 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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