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Information for unigene UN16949
| FASTA Sequence |
| Unigene ID: UN16949 | Length: 1127 |
| SNP | ACTATATGGAAGGCCGCGAGTAATAAGAGATTGTGATGTGCAGCAATTTTAACACTAGCAAAATCGTTTTGGTATACAACAAACAA
ACAAGTCTATGTCATATTAGACTCTCAACTACACATGACAAAAAGATGGGTCACATGAGGGAGGAAGCAGAAATTGTTTCTTGTTT
GGGACCCCTGTTGCAAAAATGAGACTGCTCAAGCTGTCCACGATACGCTTTCACATGGACTCTCGAGAAAGAGTTCTTCTTTTATT
AGCTTAGGCAACTGGGATGTTGGGTTCACCAAGGTTCACAAACGCCTCAGCACGGGCCATCCTACTCATTGCAGCGTTCCACGACA
CCAAATGGTTCAGAAACGTGTTTATGTACCTAGCCCTCTCGTTCTTGTAGTCCAGATAATAAGAGTGCTCCCACACATCCAAGCAG
ATGATTGGAATATCGTCCCACACTAGTGGGTTAATGGCGTTTGAGGTTTTGACCACTTCAAGTCTTCTCTCTTCCCTCTTCAAAAC
AAGCCAGACCCAGCCAGAACCAAACTGAGTAAGAGCTGCATTAGTGAACTTCTCTCTGAAATTCGTAAACGACCCAAAATCTTTCT
CAATCTGCTCAAGAACACCCTTTTGAGGCATGTCTCCACCACCAGGTTGCATCGACTCCCAGAAGAAATCATGGTTATAGACCTGC
GCAGCGTTGTTGAACTCAGGTAAAGGATTGCCGTTGTTGTATGTGGCCTTGATAAGCTCTTCCATGGTGTATCCATAGAGTCTATC
GTCTTTCCCTAACTGTTTATTTAGATTGTCCACATAGCCTCGGTGGTGTTTACCCCAATGCACTTCTAGTGTTCTTTGACTCATAT
ATGGTTCCAAAGCATCAAGAGGATAAGGAGGGGTCTTCAGACCATAGTAAGCTTCAACCTTTAAACCATCTCCTGACCGAAGAGAA
CGTCTTCTCTGCTGATTACTCAGAGGGACAAGTTTGGAGGACTTCAAACGAATACTAGAAGAATCTGAAAGAGTACAGAAACTGCT
TGTCGTCGTCACAACACAAGAAGCCATTGTTAGAGAAAACAGAGAGTTGCTTCTTCACACTCCTGCTTTTTTACAGAAGACAGAGA
CCTTATCCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ABR24272 iron-containing superoxide dismutase [Brassica napus] | 1316 | 7e-143 |
| XP_002872050 hypothetical protein ARALYDRAFT_489192 [Arabidopsis lyrata subsp. lyrata] | 1307 | 8e-142 |
| NP_197722 Fe superoxide dismutase 3 [Arabidopsis thaliana] | 1305 | 1e-141 |
| AAM63713 iron superoxide dismutase 3 [Arabidopsis thaliana] | 1303 | 2e-141 |
| AAC24834 iron superoxide dismutase 3 [Arabidopsis thaliana] | 1301 | 4e-141 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P22302 Superoxide dismutase [Fe], chloroplastic (Fragment) | 640 | 8e-066 |
| P21276 Superoxide dismutase [Fe], chloroplastic | 630 | 1e-064 |
| P50061 Superoxide dismutase [Fe] | 475 | 1e-046 |
| P77968 Superoxide dismutase [Fe] | 474 | 1e-046 |
| P18655 Superoxide dismutase [Fe] | 473 | 2e-046 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A6NA22 Superoxide dismutase | 1316 | 5e-143 |
| Q9FMX0 Superoxide dismutase | 1305 | 1e-141 |
| Q8LCD9 Superoxide dismutase | 1303 | 2e-141 |
| A6NA23 Superoxide dismutase | 1301 | 3e-141 |
| O81240 Superoxide dismutase (Fragment) | 1301 | 3e-141 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G23310.1 FSD3 (FE SUPEROXIDE DISMUTASE 3); superoxide dismutase | 1306 | 4e-144 |
| AT4G25100.1 FSD1 (FE SUPEROXIDE DISMUTASE 1); copper ion binding / superoxide dismutase | 630 | 1e-065 |
| AT4G25100.3 FSD1 (FE SUPEROXIDE DISMUTASE 1); copper ion binding / superoxide dismutase | 630 | 1e-065 |
| AT4G25100.2 FSD1 (FE SUPEROXIDE DISMUTASE 1); copper ion binding / superoxide dismutase | 630 | 1e-065 |
| AT4G25100.4 FSD1 (FE SUPEROXIDE DISMUTASE 1); copper ion binding / superoxide dismutase | 565 | 3e-058 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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