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Information for unigene UN17004
| FASTA Sequence |
| Unigene ID: UN17004 | Length: 1501 |
SSR | | AGACCAACATTTTTTTTTCATTACATGCATTTATTTGGTTTGTGTACAAAAAAAAAGAGACTTCTTCCCTCTATGTGTAATAATAA
TAATAATAATAACAGCTTGTTGTGTTGTTTTCAATTTTTAAAACATTGATTTTCTCCACCTAAAAGGTGTTCTTCCTTTGACAAGC
CTTGTCTTCATATTCCCGGGAGTCTGAGGTTCAAACCCTTCACCATTCTCACAGTTCCTCATCTCTTCAACGCTAACACTTCCTCT
GATAAAAGGCGCTAACCCTAGCCTCTTCCACCTGAAAAACCCTTTACTCCCACCACTCTTCTTCTCCAAAAGCCTCTCAACCTGCA
GATGCATTGCACTGCACTCGCTCTGCAGCCTCGCCACATCCTCTCTGAGCCTCTTTATCTCTGCTTGCTGAACATTCATCTCGCGT
TTGGACAAGCACCTCGCTCCTCCTGCAGAGCCTTGCTCAAAGTAATGTGAGCCAGAAGGGTTCGTTGTTGGACTCCTTGTTGTGCT
GCTTATCAAGCTACCACTCCAGTCAAGGTGACGGCTTAGCTTTGTCTGCTCGGTGAACAGCACTCTGATGATTGCTCTCACCGGTA
GACGATCGTTCTGTGCTGCGTGGAGGGCTGCTTCTGGCGAGAGCTTTCTGCTATCAATGAGTCTGCAGAGTTCCTTCCTTTCTTGC
TTCAACACCTGAGGATGAGCCTTGAGGTATGTGTCAATGGCACGGTACAAGCCATCCTCCGTGGTACGAGCATAGCTAGGGAGAGC
TTCGATGAGCGAAATAAACTCCGGTAGAGTCAAGCCACCGTCAAGGGCGGCTTCAGCCAAGTAAGAGTCAACAAGCTTAGCCACTT
TAACTAAAGCCGCACCGGTTTTAACACCTTCACTATCCAATCCAACGAACTTCTTCACGAGACGAGTCACGAGCCCAACGTCGAGC
AAAGTCTTAGACGTGTGGCTGAAGGAAGGTATCATGAGCTCCTTGAGCGAGGCCTGGTCCAGCTGCCACGCCACTCTGTTCTCGAG
CTCCGTCAAGTAGTTCGGATTCGCTCCGACCATCTTCGCCGTCCTGAGGAGACGGAGGAGGAAGTTGCAGGGAACGGAGTCTTTCT
CCGGCGGGAGGATTCCGATTAGGGTTTCGACGAAAAAACGTTTCTTCATTACAGAGGCCGTGACGCTTTCTGTGTGATGGTGGTGG
TGTGGTGGTGGTGTGGTGATGGCGGAGACGTTGCCGGAGAGATCGGGGAGCCATTTGGAAGCGTAGTGAGCGATGATGGAGCCGAT
GAGGTCTGGTCGGATGCCTTTGGATTTGATGCCGGTGATGGTCTTGACGAAGTAGTTCATGTCTTGGATACAAGCTTCGTCGAAAC
AAGAGTAGTACTCCATGTCTTCTCCGGTTAACTTTTCTTGGTCATGATGCGACGGTTGGTTGCCGGAGATGGTGACGGGTTCAGGC
GAAGGGGATTTCTTCATTTAGATTCGTGTTCTGTTCCCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002885094 phototropic-responsive NPH3 family protein [Arabidopsis lyrata subsp. lyrata] | 1862 | 5e-206 |
| NP_188176 Phototropic-responsive NPH3 family protein [Arabidopsis thaliana] | 1834 | 1e-202 |
| AAM61364 non-phototropic hypocotyl protein, putative [Arabidopsis thaliana] | 1781 | 1e-196 |
| NP_175686 phototropic-responsive NPH3-like protein [Arabidopsis thaliana] | 1337 | 4e-145 |
| XP_002891715 phototropic-responsive NPH3 family protein [Arabidopsis lyrata subsp. lyrata] | 1300 | 8e-141 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q682S0 Root phototropism protein 2 | 446 | 4e-043 |
| Q9FMF5 Root phototropism protein 3 | 366 | 7e-034 |
| Q9S9Q9 BTB/POZ domain-containing protein At1g30440 | 358 | 6e-033 |
| Q5KS50 Coleoptile phototropism protein 1 | 336 | 2e-030 |
| Q9FKB6 BTB/POZ domain-containing protein At5g48800 | 321 | 1e-028 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LRP8 Non-phototropic hypocotyl-like protein | 1834 | 7e-203 |
| Q8LFK3 Non-phototropic hypocotyl protein, putative | 1781 | 9e-197 |
| Q9C941 At1g52770 | 1337 | 3e-145 |
| B9RUY5 Signal transducer, putative | 1186 | 9e-128 |
| C6TE91 Putative uncharacterized protein | 1164 | 3e-125 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G15570.1 phototropic-responsive NPH3 family protein | 1834 | 4e-205 |
| AT1G52770.1 phototropic-responsive NPH3 family protein | 1337 | 2e-147 |
| AT3G08660.1 phototropic-responsive protein, putative | 465 | 2e-046 |
| AT5G67385.1 protein binding / signal transducer | 449 | 1e-044 |
| AT2G30520.1 RPT2 (ROOT PHOTOTROPISM 2); protein binding | 446 | 3e-044 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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