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Information for unigene UN17059
| FASTA Sequence |
| Unigene ID: UN17059 | Length: 902 |
| SNP | GGGTAGTCAGATTAGTCACTCTTCGAAACAAAAAAAAATCCCCAAATTTCGGAAGGATAAGCCTCGCCGGTGACGAAATTAGGGTT
TCGTTGAACAAGAAGATGGCTCACGCTTGCGTCTCCACATCGGCTTCTTCTCTCAGGTTTACAGCTGGATTCGTCTCCGCGAGTCC
CAACGCCTCCTCTTTCGATTCTCAGAAGCTTTCTCTCCCTTTCGAGCCCCTTCGTTCAAGAAAGACGAAGAAGTTAGTTAGCGAGA
GAAAGAATTGGAGGAGCTCATCAACTCCGAAGGCTGTATACTCCGGCAATCTCTGGACACCGGAGACTCCTTCGCCGCAAGGAGTT
TGGTCCATCAGAGATGATTTACAAGTGCCTTCTTCGCCTTACTTTCCTGTGTACGCACAAGGACAAGGACCACCTCCTATGGTGCA
GGAGCGTTTCCAGAGTATCATAAGCCAGCTCTTCCAATATAGGATTATTCGCTGTGGTGGTGCTGTGGATGATGATATGGCCAACA
TAATCGTGGCTCAGCTTCTCTACCTTGATGCTGTTGATCCCACTAAGGATATCGTCATGTATGTGAATTCTCCTGGTGGATCAGTT
ACAGCTGGCATGGCTATATTCGACACTATGAGGCATATCCGACCTGATGTCTCCACTGTTTGTGTCGGTCTAGCTGCTAGTATGGG
TGCATTTCTGCTTAGTGCTGGAACCAAAGGGAAAAGATACAGTCTGCCAAACTCAAGGATAATGATCCATCAACCTCTTGGTGGAG
CTCAAGTGGCCAAACCGATATCGACATTCAGCAAATGAATGCTGCATCACAGCAAACCTAAACGTTACTCGCTTACAAACTGGTCA
AGCCTTGAGAGATAACCAGACACAGACCGTGATTTCTTCATG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002889406 hypothetical protein ARALYDRAFT_887394 [Arabidopsis lyrata subsp. lyrata] | 1134 | 7e-122 |
| NP_563657 ATP-dependent Clp protease, protease subunit [Arabidopsis thaliana] | 1125 | 7e-121 |
| XP_002515273 ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis] | 936 | 6e-099 |
| ABA41488 ATP-dependent Clp protease proteolytic subunit [Carica papaya] | 927 | 7e-098 |
| ACU23464 unknown [Glycine max] | 853 | 3e-089 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9S834 ATP-dependent Clp protease proteolytic subunit 5, chloroplastic | 1125 | 3e-122 |
| Q3MFR5 ATP-dependent Clp protease proteolytic subunit 1 | 443 | 4e-043 |
| Q8YXH5 ATP-dependent Clp protease proteolytic subunit 1 | 437 | 2e-042 |
| Q2JIP1 ATP-dependent Clp protease proteolytic subunit 2 | 427 | 3e-041 |
| Q2RL31 ATP-dependent Clp protease proteolytic subunit | 427 | 3e-041 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9RND4 ATP-dependent Clp protease proteolytic subunit | 936 | 4e-099 |
| B8K1W3 ATP-dependent Clp protease proteolytic subunit | 927 | 5e-098 |
| C6TKM4 ATP-dependent Clp protease proteolytic subunit | 853 | 2e-089 |
| B9GST6 ATP-dependent Clp protease proteolytic subunit | 845 | 1e-088 |
| Q93YH0 ATP-dependent Clp protease proteolytic subunit | 805 | 6e-084 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G02560.1 CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5); serine-type endopeptidase | 1130 | 8e-124 |
| AT1G66670.1 CLPP3; serine-type endopeptidase | 362 | 9e-035 |
| AT5G23140.1 NCLPP7 (NUCLEAR-ENCODED CLP PROTEASE P7); serine-type endopeptidase | 348 | 4e-033 |
| AT5G45390.1 CLPP4 (CLP PROTEASE P4); serine-type endopeptidase | 328 | 8e-031 |
| ATCG00670.1 Encodes the only ClpP (caseinolytic protease) encoded within the plastid genome. Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). Part of the 350 kDa chloroplast Clp complex. The name reflects nomenclature described in Adam et. al (2001). | 280 | 3e-025 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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