Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN17066

FASTA Sequence
Unigene ID: UN17066Length: 1333 SSR 
GGTGGCATGCAAAACATTCTTTTGGTGGAATAAGTTATATAACAATCAGATGAAATAAACCCACTTCCCACAAGAAAAGTGATAAA
ACTATTATGGTTAAATCATGCAAATCACATTCCGAGACCTCTCAGGAACCAAAAATAATAACCCCGTACAGTGTTTCCTGCTCCAT
ATACACTTTGACTTTAAGTCATTACTTAGGAGTAAGTTCTCACTTCTCACCTACTCGTCTGTAACACAACACAAGCCAAAAGGGGA
TGCAGGTACCGTGAACTGCTAAAAGCCTTCAAAAGCAAGTAGCAACCGAGTCTTTCTTGTCTTACAACCATAAATCTTGAGCTGAT
TCCTACTATGAGAAGGGTTTCTTTTATCTGCAATACTACGACCTACGACGATGGACCAAAAGTCCCCAAAAACCAAGAGTGATGTT
GATAGAGTGTTACTCCCCATTTCGATTCAGATCTATAGATTCCCGTTGAAGGACATAGTCCATTGGAATTGGCTTGATATATAAAG
CCATATGTAAAGCGAATATATCAAGTACCGGATGATGATTTTTGGATCCACTTTTGCTTCTCATGTGAACTGGGACCCCCACCACC
ACCACCACCTCTCCGGGATGTTTTACCCTCAATAGTCAATGCAAAGCCGTCTTCTTTTCTATTGCGAGCTCCACTACGGCGACTAG
AATGTCTAGCAGAACCATTCTCGAGAGTGTGTCCACCAGAGGAGTTCACCACTTCTCCATTGTTTGCTGCTGAAGATGTCGGTTGA
TCCTCGCTGATATTGGAACCATCAGCCCGGCGAGGAGCCCACACAACACGATCAGGTCTGTCCTTGTTTCTTGCACGCCTCTCTGG
CTTTTCACTGTTGGTAGCAGAAACATGATAATCTTTCCCTGCTCGAGTGTTGGCTGGCCGAGGAGGACGCTTGGAGTTTTCTGCTT
CTGTGGGTTCCACTCTTTCCTCAGGCTGGACAAAAGATGAAGCCTGGCTAGGCCGCGTCTCATTTCTCCGAAGTATTCCCTTGATC
AACCTCCCACCAACATCAATCTTCTGATTCTGCCTTGAAGTCGAGGAGATTCCGGAATGATTAGCTTCCATCTGCTGTTCCTGTTG
TGGTGGAGTACTAACAGGGTTGTCACGGTCTTTTTTCAGGAGCAAGATCTTTTTCTTCCCAGAATCCATAGTCAATGCAATCCCTG
GGAGAGAGCTATCCATGACAGAGGCAGTTTCAGTTGCTGGTATGTCCTTTCCACTTGAATTTGCCTGATTGTAATCTTGCTTGGAG
CTGCCCACACCTTTTGAATTGTCTTTTTCCACATACTTTTTCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002891069 ATUPF3/UPF3 [Arabidopsis lyrata subsp. lyrata]9208e-097
NP_174660 Smg-4/UPF3-like protein [Arabidopsis thaliana]9021e-094
NP_001117406 Smg-4/UPF3-like protein [Arabidopsis thaliana]9021e-094
AAG12537 Unknown protein [Arabidopsis thaliana]7541e-077
CAE03133 OJ000114_01.14 [Oryza sativa Japonica Group]1456e-007

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
B3H5N7 Uncharacterized protein At1g33980.29027e-095
Q9FVW4 Putative uncharacterized protein At1g339809027e-095
Q9FX10 F12G12.20 protein7541e-077
Q7XQG3 OJ000114_01.14 protein1454e-007
Q25BM7 Putative uncharacterized protein1445e-007

Arabidopsis top hits (Blast detail)Scoree value
AT1G33980.1 Smg-4/UPF3 family protein9033e-097
AT1G33980.2 Smg-4/UPF3 family protein9033e-097

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
62  29%
 
71  14%
 
112  29%
 
101  14%
 
81  14%

Unigene MembersMember information